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Regression with Empirical Variable Selection: Description of a New Method and Application to Ecological Datasets

Despite recent papers on problems associated with full-model and stepwise regression, their use is still common throughout ecological and environmental disciplines. Alternative approaches, including generating multiple models and comparing them post-hoc using techniques such as Akaike's Informa...

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Autores principales: Goodenough, Anne E., Hart, Adam G., Stafford, Richard
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316704/
https://www.ncbi.nlm.nih.gov/pubmed/22479605
http://dx.doi.org/10.1371/journal.pone.0034338
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author Goodenough, Anne E.
Hart, Adam G.
Stafford, Richard
author_facet Goodenough, Anne E.
Hart, Adam G.
Stafford, Richard
author_sort Goodenough, Anne E.
collection PubMed
description Despite recent papers on problems associated with full-model and stepwise regression, their use is still common throughout ecological and environmental disciplines. Alternative approaches, including generating multiple models and comparing them post-hoc using techniques such as Akaike's Information Criterion (AIC), are becoming more popular. However, these are problematic when there are numerous independent variables and interpretation is often difficult when competing models contain many different variables and combinations of variables. Here, we detail a new approach, REVS (Regression with Empirical Variable Selection), which uses all-subsets regression to quantify empirical support for every independent variable. A series of models is created; the first containing the variable with most empirical support, the second containing the first variable and the next most-supported, and so on. The comparatively small number of resultant models (n = the number of predictor variables) means that post-hoc comparison is comparatively quick and easy. When tested on a real dataset – habitat and offspring quality in the great tit (Parus major) – the optimal REVS model explained more variance (higher R(2)), was more parsimonious (lower AIC), and had greater significance (lower P values), than full, stepwise or all-subsets models; it also had higher predictive accuracy based on split-sample validation. Testing REVS on ten further datasets suggested that this is typical, with R(2) values being higher than full or stepwise models (mean improvement = 31% and 7%, respectively). Results are ecologically intuitive as even when there are several competing models, they share a set of “core” variables and differ only in presence/absence of one or two additional variables. We conclude that REVS is useful for analysing complex datasets, including those in ecology and environmental disciplines.
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spelling pubmed-33167042012-04-04 Regression with Empirical Variable Selection: Description of a New Method and Application to Ecological Datasets Goodenough, Anne E. Hart, Adam G. Stafford, Richard PLoS One Research Article Despite recent papers on problems associated with full-model and stepwise regression, their use is still common throughout ecological and environmental disciplines. Alternative approaches, including generating multiple models and comparing them post-hoc using techniques such as Akaike's Information Criterion (AIC), are becoming more popular. However, these are problematic when there are numerous independent variables and interpretation is often difficult when competing models contain many different variables and combinations of variables. Here, we detail a new approach, REVS (Regression with Empirical Variable Selection), which uses all-subsets regression to quantify empirical support for every independent variable. A series of models is created; the first containing the variable with most empirical support, the second containing the first variable and the next most-supported, and so on. The comparatively small number of resultant models (n = the number of predictor variables) means that post-hoc comparison is comparatively quick and easy. When tested on a real dataset – habitat and offspring quality in the great tit (Parus major) – the optimal REVS model explained more variance (higher R(2)), was more parsimonious (lower AIC), and had greater significance (lower P values), than full, stepwise or all-subsets models; it also had higher predictive accuracy based on split-sample validation. Testing REVS on ten further datasets suggested that this is typical, with R(2) values being higher than full or stepwise models (mean improvement = 31% and 7%, respectively). Results are ecologically intuitive as even when there are several competing models, they share a set of “core” variables and differ only in presence/absence of one or two additional variables. We conclude that REVS is useful for analysing complex datasets, including those in ecology and environmental disciplines. Public Library of Science 2012-03-30 /pmc/articles/PMC3316704/ /pubmed/22479605 http://dx.doi.org/10.1371/journal.pone.0034338 Text en Goodenough et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Goodenough, Anne E.
Hart, Adam G.
Stafford, Richard
Regression with Empirical Variable Selection: Description of a New Method and Application to Ecological Datasets
title Regression with Empirical Variable Selection: Description of a New Method and Application to Ecological Datasets
title_full Regression with Empirical Variable Selection: Description of a New Method and Application to Ecological Datasets
title_fullStr Regression with Empirical Variable Selection: Description of a New Method and Application to Ecological Datasets
title_full_unstemmed Regression with Empirical Variable Selection: Description of a New Method and Application to Ecological Datasets
title_short Regression with Empirical Variable Selection: Description of a New Method and Application to Ecological Datasets
title_sort regression with empirical variable selection: description of a new method and application to ecological datasets
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3316704/
https://www.ncbi.nlm.nih.gov/pubmed/22479605
http://dx.doi.org/10.1371/journal.pone.0034338
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