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Multicenter cohort association study of SLC2A1 single nucleotide polymorphisms and age-related macular degeneration
PURPOSE: Age-related macular degeneration (AMD) is a major cause of blindness in older adults and has a genetically complex background. This study examines the potential association between single nucleotide polymorphisms (SNPs) in the glucose transporter 1 (SLC2A1) gene and AMD. SLC2A1 regulates th...
Autores principales: | , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Molecular Vision
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3324365/ https://www.ncbi.nlm.nih.gov/pubmed/22509097 |
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author | Baas, Dominique C. Ho, Lintje Tanck, Michael W.T. Fritsche, Lars G. Merriam, Joanna E. van het Slot, Ruben Koeleman, Bobby P.C. Gorgels, Theo G.M.F. van Duijn, Cornelia M. Uitterlinden, André G. de Jong, Paulus T.V.M. Hofman, Albert ten Brink, Jacoline B. Vingerling, Johannes R. Klaver, Caroline C.W. Dean, Michael Weber, Bernhard H. F. Allikmets, Rando Hageman, Gregory S. Bergen, Arthur A.B. |
author_facet | Baas, Dominique C. Ho, Lintje Tanck, Michael W.T. Fritsche, Lars G. Merriam, Joanna E. van het Slot, Ruben Koeleman, Bobby P.C. Gorgels, Theo G.M.F. van Duijn, Cornelia M. Uitterlinden, André G. de Jong, Paulus T.V.M. Hofman, Albert ten Brink, Jacoline B. Vingerling, Johannes R. Klaver, Caroline C.W. Dean, Michael Weber, Bernhard H. F. Allikmets, Rando Hageman, Gregory S. Bergen, Arthur A.B. |
author_sort | Baas, Dominique C. |
collection | PubMed |
description | PURPOSE: Age-related macular degeneration (AMD) is a major cause of blindness in older adults and has a genetically complex background. This study examines the potential association between single nucleotide polymorphisms (SNPs) in the glucose transporter 1 (SLC2A1) gene and AMD. SLC2A1 regulates the bioavailability of glucose in the retinal pigment epithelium (RPE), which might influence oxidative stress–mediated AMD pathology. METHODS: Twenty-two SNPs spanning the SLC2A1 gene were genotyped in 375 cases and 199 controls from an initial discovery cohort (the Amsterdam-Rotterdam-Netherlands study). Replication testing was performed in The Rotterdam Study (the Netherlands) and study populations from Würzburg (Germany), the Age Related Eye Disease Study (AREDS; United States), Columbia University (United States), and Iowa University (United States). Subsequently, a meta-analysis of SNP association was performed. RESULTS: In the discovery cohort, significant genotypic association between three SNPs (rs3754219, rs4660687, and rs841853) and AMD was found. Replication in five large independent (Caucasian) cohorts (4,860 cases and 4,004 controls) did not yield consistent association results. The genotype frequencies for these SNPs were significantly different for the controls and/or cases among the six individual populations. Meta-analysis revealed significant heterogeneity of effect between the studies. CONCLUSIONS: No overall association between SLC2A1 SNPs and AMD was demonstrated. Since the genotype frequencies for the three SLC2A1 SNPs were significantly different for the controls and/or cases between the six cohorts, this study corroborates previous evidence that population dependent genetic risk heterogeneity in AMD exists. |
format | Online Article Text |
id | pubmed-3324365 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Molecular Vision |
record_format | MEDLINE/PubMed |
spelling | pubmed-33243652012-04-16 Multicenter cohort association study of SLC2A1 single nucleotide polymorphisms and age-related macular degeneration Baas, Dominique C. Ho, Lintje Tanck, Michael W.T. Fritsche, Lars G. Merriam, Joanna E. van het Slot, Ruben Koeleman, Bobby P.C. Gorgels, Theo G.M.F. van Duijn, Cornelia M. Uitterlinden, André G. de Jong, Paulus T.V.M. Hofman, Albert ten Brink, Jacoline B. Vingerling, Johannes R. Klaver, Caroline C.W. Dean, Michael Weber, Bernhard H. F. Allikmets, Rando Hageman, Gregory S. Bergen, Arthur A.B. Mol Vis Research Article PURPOSE: Age-related macular degeneration (AMD) is a major cause of blindness in older adults and has a genetically complex background. This study examines the potential association between single nucleotide polymorphisms (SNPs) in the glucose transporter 1 (SLC2A1) gene and AMD. SLC2A1 regulates the bioavailability of glucose in the retinal pigment epithelium (RPE), which might influence oxidative stress–mediated AMD pathology. METHODS: Twenty-two SNPs spanning the SLC2A1 gene were genotyped in 375 cases and 199 controls from an initial discovery cohort (the Amsterdam-Rotterdam-Netherlands study). Replication testing was performed in The Rotterdam Study (the Netherlands) and study populations from Würzburg (Germany), the Age Related Eye Disease Study (AREDS; United States), Columbia University (United States), and Iowa University (United States). Subsequently, a meta-analysis of SNP association was performed. RESULTS: In the discovery cohort, significant genotypic association between three SNPs (rs3754219, rs4660687, and rs841853) and AMD was found. Replication in five large independent (Caucasian) cohorts (4,860 cases and 4,004 controls) did not yield consistent association results. The genotype frequencies for these SNPs were significantly different for the controls and/or cases among the six individual populations. Meta-analysis revealed significant heterogeneity of effect between the studies. CONCLUSIONS: No overall association between SLC2A1 SNPs and AMD was demonstrated. Since the genotype frequencies for the three SLC2A1 SNPs were significantly different for the controls and/or cases between the six cohorts, this study corroborates previous evidence that population dependent genetic risk heterogeneity in AMD exists. Molecular Vision 2012-03-17 /pmc/articles/PMC3324365/ /pubmed/22509097 Text en Copyright © 2012 Molecular Vision. http://creativecommons.org/licenses/by/3.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Article Baas, Dominique C. Ho, Lintje Tanck, Michael W.T. Fritsche, Lars G. Merriam, Joanna E. van het Slot, Ruben Koeleman, Bobby P.C. Gorgels, Theo G.M.F. van Duijn, Cornelia M. Uitterlinden, André G. de Jong, Paulus T.V.M. Hofman, Albert ten Brink, Jacoline B. Vingerling, Johannes R. Klaver, Caroline C.W. Dean, Michael Weber, Bernhard H. F. Allikmets, Rando Hageman, Gregory S. Bergen, Arthur A.B. Multicenter cohort association study of SLC2A1 single nucleotide polymorphisms and age-related macular degeneration |
title | Multicenter cohort association study of SLC2A1 single nucleotide polymorphisms and age-related macular degeneration |
title_full | Multicenter cohort association study of SLC2A1 single nucleotide polymorphisms and age-related macular degeneration |
title_fullStr | Multicenter cohort association study of SLC2A1 single nucleotide polymorphisms and age-related macular degeneration |
title_full_unstemmed | Multicenter cohort association study of SLC2A1 single nucleotide polymorphisms and age-related macular degeneration |
title_short | Multicenter cohort association study of SLC2A1 single nucleotide polymorphisms and age-related macular degeneration |
title_sort | multicenter cohort association study of slc2a1 single nucleotide polymorphisms and age-related macular degeneration |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3324365/ https://www.ncbi.nlm.nih.gov/pubmed/22509097 |
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