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Transcriptional Regulations on the Low-Temperature-Induced Floral Transition in an Orchidaceae Species, Dendrobium nobile: An Expressed Sequence Tags Analysis

Vernalization-induced flowering is a cold-relevant adaptation in many species, but little is known about the genetic basis behind in Orchidaceae species. Here, we reported a collection of 15017 expressed sequence tags (ESTs) from the vernalized axillary buds of an Orchidaceae species, Dendrobium nob...

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Autores principales: Liang, Shan, Ye, Qing-Sheng, Li, Rui-Hong, Leng, Jia-Yi, Li, Mei-Ru, Wang, Xiao-Jing, Li, Hong-Qing
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Hindawi Publishing Corporation 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3328899/
https://www.ncbi.nlm.nih.gov/pubmed/22550428
http://dx.doi.org/10.1155/2012/757801
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author Liang, Shan
Ye, Qing-Sheng
Li, Rui-Hong
Leng, Jia-Yi
Li, Mei-Ru
Wang, Xiao-Jing
Li, Hong-Qing
author_facet Liang, Shan
Ye, Qing-Sheng
Li, Rui-Hong
Leng, Jia-Yi
Li, Mei-Ru
Wang, Xiao-Jing
Li, Hong-Qing
author_sort Liang, Shan
collection PubMed
description Vernalization-induced flowering is a cold-relevant adaptation in many species, but little is known about the genetic basis behind in Orchidaceae species. Here, we reported a collection of 15017 expressed sequence tags (ESTs) from the vernalized axillary buds of an Orchidaceae species, Dendrobium nobile, which were assembled for 9616 unique gene clusters. Functional enrichment analysis showed that genes in relation to the responses to stresses, especially in the form of low temperatures, and those involving in protein biosynthesis and chromatin assembly were significantly overrepresented during 40 days of vernalization. Additionally, a total of 59 putative flowering-relevant genes were recognized, including those homologous to known key players in vernalization pathways in temperate cereals or Arabidopsis, such as cereal VRN1, FT/VRN3, and Arabidopsis AGL19. Results from this study suggest that the networks regulating vernalization-induced floral transition are conserved, but just in a part, in D. nobile, temperate cereals, and Arabidopsis.
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spelling pubmed-33288992012-05-01 Transcriptional Regulations on the Low-Temperature-Induced Floral Transition in an Orchidaceae Species, Dendrobium nobile: An Expressed Sequence Tags Analysis Liang, Shan Ye, Qing-Sheng Li, Rui-Hong Leng, Jia-Yi Li, Mei-Ru Wang, Xiao-Jing Li, Hong-Qing Comp Funct Genomics Research Article Vernalization-induced flowering is a cold-relevant adaptation in many species, but little is known about the genetic basis behind in Orchidaceae species. Here, we reported a collection of 15017 expressed sequence tags (ESTs) from the vernalized axillary buds of an Orchidaceae species, Dendrobium nobile, which were assembled for 9616 unique gene clusters. Functional enrichment analysis showed that genes in relation to the responses to stresses, especially in the form of low temperatures, and those involving in protein biosynthesis and chromatin assembly were significantly overrepresented during 40 days of vernalization. Additionally, a total of 59 putative flowering-relevant genes were recognized, including those homologous to known key players in vernalization pathways in temperate cereals or Arabidopsis, such as cereal VRN1, FT/VRN3, and Arabidopsis AGL19. Results from this study suggest that the networks regulating vernalization-induced floral transition are conserved, but just in a part, in D. nobile, temperate cereals, and Arabidopsis. Hindawi Publishing Corporation 2012 2012-04-09 /pmc/articles/PMC3328899/ /pubmed/22550428 http://dx.doi.org/10.1155/2012/757801 Text en Copyright © 2012 Shan Liang et al. https://creativecommons.org/licenses/by/3.0/ This is an open access article distributed under the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Liang, Shan
Ye, Qing-Sheng
Li, Rui-Hong
Leng, Jia-Yi
Li, Mei-Ru
Wang, Xiao-Jing
Li, Hong-Qing
Transcriptional Regulations on the Low-Temperature-Induced Floral Transition in an Orchidaceae Species, Dendrobium nobile: An Expressed Sequence Tags Analysis
title Transcriptional Regulations on the Low-Temperature-Induced Floral Transition in an Orchidaceae Species, Dendrobium nobile: An Expressed Sequence Tags Analysis
title_full Transcriptional Regulations on the Low-Temperature-Induced Floral Transition in an Orchidaceae Species, Dendrobium nobile: An Expressed Sequence Tags Analysis
title_fullStr Transcriptional Regulations on the Low-Temperature-Induced Floral Transition in an Orchidaceae Species, Dendrobium nobile: An Expressed Sequence Tags Analysis
title_full_unstemmed Transcriptional Regulations on the Low-Temperature-Induced Floral Transition in an Orchidaceae Species, Dendrobium nobile: An Expressed Sequence Tags Analysis
title_short Transcriptional Regulations on the Low-Temperature-Induced Floral Transition in an Orchidaceae Species, Dendrobium nobile: An Expressed Sequence Tags Analysis
title_sort transcriptional regulations on the low-temperature-induced floral transition in an orchidaceae species, dendrobium nobile: an expressed sequence tags analysis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3328899/
https://www.ncbi.nlm.nih.gov/pubmed/22550428
http://dx.doi.org/10.1155/2012/757801
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