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Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis

The bacterium Escherichia coli in suspension in a liquid medium swims by a succession of runs and tumbles, effectively describing a random walk. The tumbles randomize incompletely, i.e. with a directional persistence, the orientation taken by the bacterium. Here, we model these tumbles by an active...

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Detalles Bibliográficos
Autores principales: Saragosti, Jonathan, Silberzan, Pascal, Buguin, Axel
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329434/
https://www.ncbi.nlm.nih.gov/pubmed/22530021
http://dx.doi.org/10.1371/journal.pone.0035412
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author Saragosti, Jonathan
Silberzan, Pascal
Buguin, Axel
author_facet Saragosti, Jonathan
Silberzan, Pascal
Buguin, Axel
author_sort Saragosti, Jonathan
collection PubMed
description The bacterium Escherichia coli in suspension in a liquid medium swims by a succession of runs and tumbles, effectively describing a random walk. The tumbles randomize incompletely, i.e. with a directional persistence, the orientation taken by the bacterium. Here, we model these tumbles by an active rotational diffusion process characterized by a diffusion coefficient and a diffusion time. In homogeneous media, this description accounts well for the experimental reorientations. In shallow gradients of nutrients, tumbles are still described by a unique rotational diffusion coefficient. Together with an increase in the run length, these tumbles significantly contribute to the net chemotactic drift via a modulation of their duration as a function of the direction of the preceding run. Finally, we discuss the limits of this model in propagating concentration waves characterized by steep gradients. In that case, the effective rotational diffusion coefficient itself varies with the direction of the preceding run. We propose that this effect is related to the number of flagella involved in the reorientation process.
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spelling pubmed-33294342012-04-23 Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis Saragosti, Jonathan Silberzan, Pascal Buguin, Axel PLoS One Research Article The bacterium Escherichia coli in suspension in a liquid medium swims by a succession of runs and tumbles, effectively describing a random walk. The tumbles randomize incompletely, i.e. with a directional persistence, the orientation taken by the bacterium. Here, we model these tumbles by an active rotational diffusion process characterized by a diffusion coefficient and a diffusion time. In homogeneous media, this description accounts well for the experimental reorientations. In shallow gradients of nutrients, tumbles are still described by a unique rotational diffusion coefficient. Together with an increase in the run length, these tumbles significantly contribute to the net chemotactic drift via a modulation of their duration as a function of the direction of the preceding run. Finally, we discuss the limits of this model in propagating concentration waves characterized by steep gradients. In that case, the effective rotational diffusion coefficient itself varies with the direction of the preceding run. We propose that this effect is related to the number of flagella involved in the reorientation process. Public Library of Science 2012-04-18 /pmc/articles/PMC3329434/ /pubmed/22530021 http://dx.doi.org/10.1371/journal.pone.0035412 Text en Saragosti et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Saragosti, Jonathan
Silberzan, Pascal
Buguin, Axel
Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis
title Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis
title_full Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis
title_fullStr Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis
title_full_unstemmed Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis
title_short Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis
title_sort modeling e. coli tumbles by rotational diffusion. implications for chemotaxis
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329434/
https://www.ncbi.nlm.nih.gov/pubmed/22530021
http://dx.doi.org/10.1371/journal.pone.0035412
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