Cargando…
Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis
The bacterium Escherichia coli in suspension in a liquid medium swims by a succession of runs and tumbles, effectively describing a random walk. The tumbles randomize incompletely, i.e. with a directional persistence, the orientation taken by the bacterium. Here, we model these tumbles by an active...
Autores principales: | , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329434/ https://www.ncbi.nlm.nih.gov/pubmed/22530021 http://dx.doi.org/10.1371/journal.pone.0035412 |
_version_ | 1782229839162376192 |
---|---|
author | Saragosti, Jonathan Silberzan, Pascal Buguin, Axel |
author_facet | Saragosti, Jonathan Silberzan, Pascal Buguin, Axel |
author_sort | Saragosti, Jonathan |
collection | PubMed |
description | The bacterium Escherichia coli in suspension in a liquid medium swims by a succession of runs and tumbles, effectively describing a random walk. The tumbles randomize incompletely, i.e. with a directional persistence, the orientation taken by the bacterium. Here, we model these tumbles by an active rotational diffusion process characterized by a diffusion coefficient and a diffusion time. In homogeneous media, this description accounts well for the experimental reorientations. In shallow gradients of nutrients, tumbles are still described by a unique rotational diffusion coefficient. Together with an increase in the run length, these tumbles significantly contribute to the net chemotactic drift via a modulation of their duration as a function of the direction of the preceding run. Finally, we discuss the limits of this model in propagating concentration waves characterized by steep gradients. In that case, the effective rotational diffusion coefficient itself varies with the direction of the preceding run. We propose that this effect is related to the number of flagella involved in the reorientation process. |
format | Online Article Text |
id | pubmed-3329434 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-33294342012-04-23 Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis Saragosti, Jonathan Silberzan, Pascal Buguin, Axel PLoS One Research Article The bacterium Escherichia coli in suspension in a liquid medium swims by a succession of runs and tumbles, effectively describing a random walk. The tumbles randomize incompletely, i.e. with a directional persistence, the orientation taken by the bacterium. Here, we model these tumbles by an active rotational diffusion process characterized by a diffusion coefficient and a diffusion time. In homogeneous media, this description accounts well for the experimental reorientations. In shallow gradients of nutrients, tumbles are still described by a unique rotational diffusion coefficient. Together with an increase in the run length, these tumbles significantly contribute to the net chemotactic drift via a modulation of their duration as a function of the direction of the preceding run. Finally, we discuss the limits of this model in propagating concentration waves characterized by steep gradients. In that case, the effective rotational diffusion coefficient itself varies with the direction of the preceding run. We propose that this effect is related to the number of flagella involved in the reorientation process. Public Library of Science 2012-04-18 /pmc/articles/PMC3329434/ /pubmed/22530021 http://dx.doi.org/10.1371/journal.pone.0035412 Text en Saragosti et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Saragosti, Jonathan Silberzan, Pascal Buguin, Axel Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis |
title | Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis |
title_full | Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis |
title_fullStr | Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis |
title_full_unstemmed | Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis |
title_short | Modeling E. coli Tumbles by Rotational Diffusion. Implications for Chemotaxis |
title_sort | modeling e. coli tumbles by rotational diffusion. implications for chemotaxis |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3329434/ https://www.ncbi.nlm.nih.gov/pubmed/22530021 http://dx.doi.org/10.1371/journal.pone.0035412 |
work_keys_str_mv | AT saragostijonathan modelingecolitumblesbyrotationaldiffusionimplicationsforchemotaxis AT silberzanpascal modelingecolitumblesbyrotationaldiffusionimplicationsforchemotaxis AT buguinaxel modelingecolitumblesbyrotationaldiffusionimplicationsforchemotaxis |