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Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives

While technological advancements in neuroimaging scanner engineering have improved the efficiency of data acquisition, electronic data capture methods will likewise significantly expedite the populating of large-scale neuroimaging databases. As they do and these archives grow in size, a particular c...

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Autores principales: Bowman, Ian, Joshi, Shantanu H., Van Horn, John D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3332235/
https://www.ncbi.nlm.nih.gov/pubmed/22536181
http://dx.doi.org/10.3389/fninf.2012.00011
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author Bowman, Ian
Joshi, Shantanu H.
Van Horn, John D.
author_facet Bowman, Ian
Joshi, Shantanu H.
Van Horn, John D.
author_sort Bowman, Ian
collection PubMed
description While technological advancements in neuroimaging scanner engineering have improved the efficiency of data acquisition, electronic data capture methods will likewise significantly expedite the populating of large-scale neuroimaging databases. As they do and these archives grow in size, a particular challenge lies in examining and interacting with the information that these resources contain through the development of compelling, user-driven approaches for data exploration and mining. In this article, we introduce the informatics visualization for neuroimaging (INVIZIAN) framework for the graphical rendering of, and dynamic interaction with the contents of large-scale neuroimaging data sets. We describe the rationale behind INVIZIAN, detail its development, and demonstrate its usage in examining a collection of over 900 T1-anatomical magnetic resonance imaging (MRI) image volumes from across a diverse set of clinical neuroimaging studies drawn from a leading neuroimaging database. Using a collection of cortical surface metrics and means for examining brain similarity, INVIZIAN graphically displays brain surfaces as points in a coordinate space and enables classification of clusters of neuroanatomically similar MRI images and data mining. As an initial step toward addressing the need for such user-friendly tools, INVIZIAN provides a highly unique means to interact with large quantities of electronic brain imaging archives in ways suitable for hypothesis generation and data mining.
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spelling pubmed-33322352012-04-25 Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives Bowman, Ian Joshi, Shantanu H. Van Horn, John D. Front Neuroinform Neuroscience While technological advancements in neuroimaging scanner engineering have improved the efficiency of data acquisition, electronic data capture methods will likewise significantly expedite the populating of large-scale neuroimaging databases. As they do and these archives grow in size, a particular challenge lies in examining and interacting with the information that these resources contain through the development of compelling, user-driven approaches for data exploration and mining. In this article, we introduce the informatics visualization for neuroimaging (INVIZIAN) framework for the graphical rendering of, and dynamic interaction with the contents of large-scale neuroimaging data sets. We describe the rationale behind INVIZIAN, detail its development, and demonstrate its usage in examining a collection of over 900 T1-anatomical magnetic resonance imaging (MRI) image volumes from across a diverse set of clinical neuroimaging studies drawn from a leading neuroimaging database. Using a collection of cortical surface metrics and means for examining brain similarity, INVIZIAN graphically displays brain surfaces as points in a coordinate space and enables classification of clusters of neuroanatomically similar MRI images and data mining. As an initial step toward addressing the need for such user-friendly tools, INVIZIAN provides a highly unique means to interact with large quantities of electronic brain imaging archives in ways suitable for hypothesis generation and data mining. Frontiers Research Foundation 2012-04-23 /pmc/articles/PMC3332235/ /pubmed/22536181 http://dx.doi.org/10.3389/fninf.2012.00011 Text en Copyright © 2012 Bowman, Joshi and Van Horn. http://www.frontiersin.org/licenseagreement This is an open-access article distributed under the terms of the Creative Commons Attribution Non Commercial License, which permits non-commercial use, distribution, and reproduction in other forums, provided the original authors and source are credited.
spellingShingle Neuroscience
Bowman, Ian
Joshi, Shantanu H.
Van Horn, John D.
Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives
title Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives
title_full Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives
title_fullStr Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives
title_full_unstemmed Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives
title_short Visual Systems for Interactive Exploration and Mining of Large-Scale Neuroimaging Data Archives
title_sort visual systems for interactive exploration and mining of large-scale neuroimaging data archives
topic Neuroscience
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3332235/
https://www.ncbi.nlm.nih.gov/pubmed/22536181
http://dx.doi.org/10.3389/fninf.2012.00011
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