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Uberon, an integrative multi-species anatomy ontology

We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes representing a variety of anatomical entities, organized according to traditional anatomical classification criteria. The ontology represents structures in a species-neutral way and includes extensive associatio...

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Detalles Bibliográficos
Autores principales: Mungall, Christopher J, Torniai, Carlo, Gkoutos, Georgios V, Lewis, Suzanna E, Haendel, Melissa A
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334586/
https://www.ncbi.nlm.nih.gov/pubmed/22293552
http://dx.doi.org/10.1186/gb-2012-13-1-r5
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author Mungall, Christopher J
Torniai, Carlo
Gkoutos, Georgios V
Lewis, Suzanna E
Haendel, Melissa A
author_facet Mungall, Christopher J
Torniai, Carlo
Gkoutos, Georgios V
Lewis, Suzanna E
Haendel, Melissa A
author_sort Mungall, Christopher J
collection PubMed
description We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes representing a variety of anatomical entities, organized according to traditional anatomical classification criteria. The ontology represents structures in a species-neutral way and includes extensive associations to existing species-centric anatomical ontologies, allowing integration of model organism and human data. Uberon provides a necessary bridge between anatomical structures in different taxa for cross-species inference. It uses novel methods for representing taxonomic variation, and has proved to be essential for translational phenotype analyses. Uberon is available at http://uberon.org
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spelling pubmed-33345862012-04-25 Uberon, an integrative multi-species anatomy ontology Mungall, Christopher J Torniai, Carlo Gkoutos, Georgios V Lewis, Suzanna E Haendel, Melissa A Genome Biol Method We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes representing a variety of anatomical entities, organized according to traditional anatomical classification criteria. The ontology represents structures in a species-neutral way and includes extensive associations to existing species-centric anatomical ontologies, allowing integration of model organism and human data. Uberon provides a necessary bridge between anatomical structures in different taxa for cross-species inference. It uses novel methods for representing taxonomic variation, and has proved to be essential for translational phenotype analyses. Uberon is available at http://uberon.org BioMed Central 2012 2012-01-31 /pmc/articles/PMC3334586/ /pubmed/22293552 http://dx.doi.org/10.1186/gb-2012-13-1-r5 Text en Copyright ©2012 Mungall et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Method
Mungall, Christopher J
Torniai, Carlo
Gkoutos, Georgios V
Lewis, Suzanna E
Haendel, Melissa A
Uberon, an integrative multi-species anatomy ontology
title Uberon, an integrative multi-species anatomy ontology
title_full Uberon, an integrative multi-species anatomy ontology
title_fullStr Uberon, an integrative multi-species anatomy ontology
title_full_unstemmed Uberon, an integrative multi-species anatomy ontology
title_short Uberon, an integrative multi-species anatomy ontology
title_sort uberon, an integrative multi-species anatomy ontology
topic Method
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334586/
https://www.ncbi.nlm.nih.gov/pubmed/22293552
http://dx.doi.org/10.1186/gb-2012-13-1-r5
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