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Uberon, an integrative multi-species anatomy ontology
We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes representing a variety of anatomical entities, organized according to traditional anatomical classification criteria. The ontology represents structures in a species-neutral way and includes extensive associatio...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334586/ https://www.ncbi.nlm.nih.gov/pubmed/22293552 http://dx.doi.org/10.1186/gb-2012-13-1-r5 |
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author | Mungall, Christopher J Torniai, Carlo Gkoutos, Georgios V Lewis, Suzanna E Haendel, Melissa A |
author_facet | Mungall, Christopher J Torniai, Carlo Gkoutos, Georgios V Lewis, Suzanna E Haendel, Melissa A |
author_sort | Mungall, Christopher J |
collection | PubMed |
description | We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes representing a variety of anatomical entities, organized according to traditional anatomical classification criteria. The ontology represents structures in a species-neutral way and includes extensive associations to existing species-centric anatomical ontologies, allowing integration of model organism and human data. Uberon provides a necessary bridge between anatomical structures in different taxa for cross-species inference. It uses novel methods for representing taxonomic variation, and has proved to be essential for translational phenotype analyses. Uberon is available at http://uberon.org |
format | Online Article Text |
id | pubmed-3334586 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-33345862012-04-25 Uberon, an integrative multi-species anatomy ontology Mungall, Christopher J Torniai, Carlo Gkoutos, Georgios V Lewis, Suzanna E Haendel, Melissa A Genome Biol Method We present Uberon, an integrated cross-species ontology consisting of over 6,500 classes representing a variety of anatomical entities, organized according to traditional anatomical classification criteria. The ontology represents structures in a species-neutral way and includes extensive associations to existing species-centric anatomical ontologies, allowing integration of model organism and human data. Uberon provides a necessary bridge between anatomical structures in different taxa for cross-species inference. It uses novel methods for representing taxonomic variation, and has proved to be essential for translational phenotype analyses. Uberon is available at http://uberon.org BioMed Central 2012 2012-01-31 /pmc/articles/PMC3334586/ /pubmed/22293552 http://dx.doi.org/10.1186/gb-2012-13-1-r5 Text en Copyright ©2012 Mungall et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Method Mungall, Christopher J Torniai, Carlo Gkoutos, Georgios V Lewis, Suzanna E Haendel, Melissa A Uberon, an integrative multi-species anatomy ontology |
title | Uberon, an integrative multi-species anatomy ontology |
title_full | Uberon, an integrative multi-species anatomy ontology |
title_fullStr | Uberon, an integrative multi-species anatomy ontology |
title_full_unstemmed | Uberon, an integrative multi-species anatomy ontology |
title_short | Uberon, an integrative multi-species anatomy ontology |
title_sort | uberon, an integrative multi-species anatomy ontology |
topic | Method |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3334586/ https://www.ncbi.nlm.nih.gov/pubmed/22293552 http://dx.doi.org/10.1186/gb-2012-13-1-r5 |
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