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Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy

Biomacromolecules that are challenging for the usual structural techniques can be studied with atomic resolution by solid-state nuclear magnetic resonance. However, the paucity of >5 Å distance restraints, traditionally derived from measurements of magnetic dipole-dipole couplings between protein...

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Autores principales: Sengupta, Ishita, Nadaud, Philippe S., Helmus, Jonathan J., Schwieters, Charles D., Jaroniec, Christopher P.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335742/
https://www.ncbi.nlm.nih.gov/pubmed/22522262
http://dx.doi.org/10.1038/nchem.1299
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author Sengupta, Ishita
Nadaud, Philippe S.
Helmus, Jonathan J.
Schwieters, Charles D.
Jaroniec, Christopher P.
author_facet Sengupta, Ishita
Nadaud, Philippe S.
Helmus, Jonathan J.
Schwieters, Charles D.
Jaroniec, Christopher P.
author_sort Sengupta, Ishita
collection PubMed
description Biomacromolecules that are challenging for the usual structural techniques can be studied with atomic resolution by solid-state nuclear magnetic resonance. However, the paucity of >5 Å distance restraints, traditionally derived from measurements of magnetic dipole-dipole couplings between protein nuclei, is a major bottleneck that hampers such structure elucidation efforts. Here we describe a general approach that enables the rapid determination of global protein fold in the solid phase via measurements of nuclear paramagnetic relaxation enhancements (PREs) in several analogs of the protein of interest containing covalently-attached paramagnetic tags, without the use of conventional internuclear distance restraints. The method is demonstrated using six cysteine-EDTA-Cu(2+) mutants of the 56-residue B1 immunoglobulin-binding domain of protein G, for which ~230 longitudinal backbone (15)N PREs corresponding to ~10-20 Å distances were obtained. The mean protein fold determined in this manner agrees with the X-ray structure with a backbone atom root-mean-square deviation of 1.8 Å.
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spelling pubmed-33357422012-11-01 Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy Sengupta, Ishita Nadaud, Philippe S. Helmus, Jonathan J. Schwieters, Charles D. Jaroniec, Christopher P. Nat Chem Article Biomacromolecules that are challenging for the usual structural techniques can be studied with atomic resolution by solid-state nuclear magnetic resonance. However, the paucity of >5 Å distance restraints, traditionally derived from measurements of magnetic dipole-dipole couplings between protein nuclei, is a major bottleneck that hampers such structure elucidation efforts. Here we describe a general approach that enables the rapid determination of global protein fold in the solid phase via measurements of nuclear paramagnetic relaxation enhancements (PREs) in several analogs of the protein of interest containing covalently-attached paramagnetic tags, without the use of conventional internuclear distance restraints. The method is demonstrated using six cysteine-EDTA-Cu(2+) mutants of the 56-residue B1 immunoglobulin-binding domain of protein G, for which ~230 longitudinal backbone (15)N PREs corresponding to ~10-20 Å distances were obtained. The mean protein fold determined in this manner agrees with the X-ray structure with a backbone atom root-mean-square deviation of 1.8 Å. 2012-03-18 /pmc/articles/PMC3335742/ /pubmed/22522262 http://dx.doi.org/10.1038/nchem.1299 Text en Users may view, print, copy, download and text and data- mine the content in such documents, for the purposes of academic research, subject always to the full Conditions of use: http://www.nature.com/authors/editorial_policies/license.html#terms
spellingShingle Article
Sengupta, Ishita
Nadaud, Philippe S.
Helmus, Jonathan J.
Schwieters, Charles D.
Jaroniec, Christopher P.
Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy
title Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy
title_full Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy
title_fullStr Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy
title_full_unstemmed Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy
title_short Protein fold determined by paramagnetic magic-angle spinning solid-state NMR spectroscopy
title_sort protein fold determined by paramagnetic magic-angle spinning solid-state nmr spectroscopy
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3335742/
https://www.ncbi.nlm.nih.gov/pubmed/22522262
http://dx.doi.org/10.1038/nchem.1299
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