Cargando…

HGT turbulence: Confounding phylogenetic influence of duplicative horizontal transfer and differential gene conversion

Horizontal gene transfer (HGT) often leads to phylogenetic incongruence. When “duplicative HGT” introduces a second copy of a pre-existing gene, the two copies may then engage in gene conversion, leading to phylogenetically mosiac genes. When duplicative HGT is followed by differential gene conversi...

Descripción completa

Detalles Bibliográficos
Autores principales:	Hao, Weilong, Palmer, Jeffrey
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Landes Bioscience 2011
Materias:	Letter to the Editor
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3337133/ https://www.ncbi.nlm.nih.gov/pubmed/22545235 http://dx.doi.org/10.4161/mge.19030

Ejemplares similares

HgtSIM: a simulator for horizontal gene transfer (HGT) in microbial communities
por: Song, Weizhi, et al.
Publicado: (2017)

HGT-Gen: a tool for generating a phylogenetic tree with horizontal gene transfer
por: Horiike, Tokumasa, et al.
Publicado: (2011)

Biofilms: hot spots of horizontal gene transfer (HGT) in aquatic environments, with a focus on a new HGT mechanism
por: Abe, Kimihiro, et al.
Publicado: (2020)

Modeling horizontal gene transfer (HGT) in the gut of the Chagas disease vector Rhodnius prolixus
por: Matthews, Scott, et al.
Publicado: (2011)

HGT-Finder: A New Tool for Horizontal Gene Transfer Finding and Application to Aspergillus genomes
por: Nguyen, Marcus, et al.
Publicado: (2015)

Horizontal Transfer and Gene Conversion as an Important Driving Force in Shaping the Landscape of Mitochondrial Introns
por: Wu, Baojun, et al.
Publicado: (2014)

Complete Plastid and Mitochondrial Genomes of Aeginetia indica Reveal Intracellular Gene Transfer (IGT), Horizontal Gene Transfer (HGT), and Cytoplasmic Male Sterility (CMS)
por: Choi, Kyoung-Su, et al.
Publicado: (2021)

HGTree v2.0: a comprehensive database update for horizontal gene transfer (HGT) events detected by the tree-reconciliation method
por: Choi, Youngseok, et al.
Publicado: (2022)

Deep learning for HGT insertion sites recognition
por: Li, Chen, et al.
Publicado: (2020)

Phylogenetic inference in Rafflesiales: the influence of rate heterogeneity and horizontal gene transfer
por: Nickrent, Daniel L, et al.
Publicado: (2004)

Horizontal acquisition of multiple mitochondrial genes from a parasitic plant followed by gene conversion with host mitochondrial genes
por: Mower, Jeffrey P, et al.
Publicado: (2010)

Bootstrap-based Support of HGT Inferred by Maximum Parsimony
por: Park, Hyun Jung, et al.
Publicado: (2010)

Horizontal Transfer, Not Duplication, Drives the Expansion of Protein Families in Prokaryotes
por: Treangen, Todd J., et al.
Publicado: (2011)

Editorial: Rhizobiaceae mediated HGT: Facts, mechanisms, and evolutionary consequences
por: Matveeva, Tatiana, et al.
Publicado: (2023)

The power of phylogenetic approaches to detect horizontally transferred genes
por: Poptsova, Maria S, et al.
Publicado: (2007)

Detection of Horizontal Gene Transfers from Phylogenetic Comparisons
por: Pylro, Victor Satler, et al.
Publicado: (2012)

Computational and phylogenetic validation of nematode horizontal gene transfer
por: Scholl, Elizabeth H, et al.
Publicado: (2011)

Efficient algorithms for the reconciliation problem with gene duplication, horizontal transfer and loss
por: Bansal, Mukul S., et al.
Publicado: (2012)

Multiple recent horizontal transfers of the cox1 intron in Solanaceae and extended co-conversion of flanking exons
por: Sanchez-Puerta, Maria V, et al.
Publicado: (2011)

Dissecting the HGT network of carbon metabolic genes in soil-borne microbiota
por: Li, Liangzhi, et al.
Publicado: (2023)

SPRIT: Identifying horizontal gene transfer in rooted phylogenetic trees
por: Hill, Tobias, et al.
Publicado: (2010)

Extensive horizontal gene transfer, duplication, and loss of chlorophyll synthesis genes in the algae
por: Hunsperger, Heather M, et al.
Publicado: (2015)

Microsporidia: Horizontal gene transfers in vicious parasites
por: Selman, Mohammed, et al.
Publicado: (2011)

Evolution of a Sigma Factor: An All-In-One of Gene Duplication, Horizontal Gene Transfer, Purifying Selection, and Promoter Differentiation
por: López-Leal, Gamaliel, et al.
Publicado: (2016)

Use of Potent Topical Corticosteroids (TCS) for Hypergranulation Tissue (HGT) in Pediatric Patients
por: Margulies, Shae, et al.
Publicado: (2022)

Selection on Horizontally Transferred and Duplicated Genes in Sinorhizobium (Ensifer), the Root-Nodule Symbionts of Medicago
por: Epstein, Brendan, et al.
Publicado: (2014)

Selection on Horizontally Transferred and Duplicated Genes in Sinorhizobium (Ensifer), the Root-Nodule Symbionts of Medicago
por: Epstein, Brendan, et al.
Publicado: (2015)

Horizontal transfer and phylogenetic distribution of the immune evasion factor tarP
por: Gerlach, David, et al.
Publicado: (2022)

HGTphyloDetect: facilitating the identification and phylogenetic analysis of horizontal gene transfer
por: Yuan, Le, et al.
Publicado: (2023)

Accounting for confounding
por: Raina, Sunil Kumar
Publicado: (2015)

Unexpected complex horizontal gene transfer in teleost fish
por: Han, Zhiqiang, et al.
Publicado: (2022)

Influence of Glucose on Candida albicans and the Relevance of the Complement FH-Binding Molecule Hgt1 in a Murine Model of Candidiasis
por: Harpf, Verena, et al.
Publicado: (2022)

Duplication and expression of horizontally transferred polygalacturonase genes is associated with host range expansion of mirid bugs
por: Xu, Pengjun, et al.
Publicado: (2019)

Horizontal Gene Transfer and Gene Duplication of β-Fructofuranosidase Confer Lepidopteran Insects Metabolic Benefits
por: Dai, Xiangping, et al.
Publicado: (2021)

Mode Selective Up-conversion Detection with Turbulence
por: Zhang, He, et al.
Publicado: (2019)

Horizontal gene transfer in human-associated microorganisms inferred by phylogenetic reconstruction and reconciliation
por: Jeong, Hyeonsoo, et al.
Publicado: (2019)

Numerical and Experimental Investigations of Horizontal Turbulent Particle–Liquid Pipe Flow
por: Yang, ZhuangJian, et al.
Publicado: (2022)

Milk Fermented by Propionibacterium freudenreichii Induces Apoptosis of HGT-1 Human Gastric Cancer Cells
por: Cousin, Fabien J., et al.
Publicado: (2012)

Confounding factors influencing the scroll width of Descemet membrane endothelial keratoplasty graft
por: Parekh, Mohit, et al.
Publicado: (2021)

Transient Duplication-Dependent Divergence and Horizontal Transfer Underlie the Evolutionary Dynamics of Bacterial Cell–Cell Signaling
por: Even-Tov, Eran, et al.
Publicado: (2016)

Cannot write session to /tmp/vufind_sessions/sess_cr60cue04jf5ec4c6jnkveecek