GOHTAM: a website for ‘Genomic Origin of Horizontal Transfers, Alignment and Metagenomics’

Motivation: This website allows the detection of horizontal transfers based on a combination of parametric methods and proposes an origin by researching neighbors in a bank of genomic signatures. This bank is also used to research an origin to DNA fragments from metagenomics studies. Results: Differ...

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Detalles Bibliográficos
Autores principales: Ménigaud, Sabine, Mallet, Ludovic, Picord, Géraldine, Churlaud, Cécile, Borrel, Alexandre, Deschavanne, Patrick
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Oxford University Press 2012
Materias:
Applications Note
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338014/
https://www.ncbi.nlm.nih.gov/pubmed/22426345
http://dx.doi.org/10.1093/bioinformatics/bts118
Descripción
Sumario:Motivation: This website allows the detection of horizontal transfers based on a combination of parametric methods and proposes an origin by researching neighbors in a bank of genomic signatures. This bank is also used to research an origin to DNA fragments from metagenomics studies. Results: Different services are provided like the possibility of inferring a phylogenetic tree with sequence signatures or comparing two genomes and displaying the rearrangements that happened since their separation. Availability and implementation: http://gohtam.rpbs.univ-paris-diderot.fr/ Contact: patrick.deschavanne@univ-paris-diderot.fr; ludovic.mallet@jouy.inra.fr Supplementary information: Supplementary data are available at Bioinformatics online http://gohtam.rpbs.univ-paris-diderot.fr:8080/Data/bin/GOHTAM_bin.tgz

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