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Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions

BACKGROUND: There are currently no reliable markers of acute domoic acid toxicosis (DAT) for California sea lions. We investigated whether patterns of serum peptides could diagnose acute DAT. Serum peptides were analyzed by MALDI-TOF mass spectrometry from 107 sea lions (acute DAT n = 34; non-DAT n...

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Autores principales: Neely, Benjamin A, Soper, Jennifer L, Greig, Denise J, Carlin, Kevin P, Favre, Elizabeth G, Gulland, Frances MD, Almeida, Jonas S, Janech, Michael G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338078/
https://www.ncbi.nlm.nih.gov/pubmed/22429742
http://dx.doi.org/10.1186/1477-5956-10-18
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author Neely, Benjamin A
Soper, Jennifer L
Greig, Denise J
Carlin, Kevin P
Favre, Elizabeth G
Gulland, Frances MD
Almeida, Jonas S
Janech, Michael G
author_facet Neely, Benjamin A
Soper, Jennifer L
Greig, Denise J
Carlin, Kevin P
Favre, Elizabeth G
Gulland, Frances MD
Almeida, Jonas S
Janech, Michael G
author_sort Neely, Benjamin A
collection PubMed
description BACKGROUND: There are currently no reliable markers of acute domoic acid toxicosis (DAT) for California sea lions. We investigated whether patterns of serum peptides could diagnose acute DAT. Serum peptides were analyzed by MALDI-TOF mass spectrometry from 107 sea lions (acute DAT n = 34; non-DAT n = 73). Artificial neural networks (ANN) were trained using MALDI-TOF data. Individual peaks and neural networks were qualified using an independent test set (n = 20). RESULTS: No single peak was a good classifier of acute DAT, and ANN models were the best predictors of acute DAT. Performance measures for a single median ANN were: sensitivity, 100%; specificity, 60%; positive predictive value, 71%; negative predictive value, 100%. When 101 ANNs were combined and allowed to vote for the outcome, the performance measures were: sensitivity, 30%; specificity, 100%; positive predictive value, 100%; negative predictive value, 59%. CONCLUSIONS: These results suggest that MALDI-TOF peptide profiling and neural networks can perform either as a highly sensitive (100% negative predictive value) or a highly specific (100% positive predictive value) diagnostic tool for acute DAT. This also suggests that machine learning directed by populations of predictive models offer the ability to modulate the predictive effort into a specific type of error.
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spelling pubmed-33380782012-04-27 Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions Neely, Benjamin A Soper, Jennifer L Greig, Denise J Carlin, Kevin P Favre, Elizabeth G Gulland, Frances MD Almeida, Jonas S Janech, Michael G Proteome Sci Research BACKGROUND: There are currently no reliable markers of acute domoic acid toxicosis (DAT) for California sea lions. We investigated whether patterns of serum peptides could diagnose acute DAT. Serum peptides were analyzed by MALDI-TOF mass spectrometry from 107 sea lions (acute DAT n = 34; non-DAT n = 73). Artificial neural networks (ANN) were trained using MALDI-TOF data. Individual peaks and neural networks were qualified using an independent test set (n = 20). RESULTS: No single peak was a good classifier of acute DAT, and ANN models were the best predictors of acute DAT. Performance measures for a single median ANN were: sensitivity, 100%; specificity, 60%; positive predictive value, 71%; negative predictive value, 100%. When 101 ANNs were combined and allowed to vote for the outcome, the performance measures were: sensitivity, 30%; specificity, 100%; positive predictive value, 100%; negative predictive value, 59%. CONCLUSIONS: These results suggest that MALDI-TOF peptide profiling and neural networks can perform either as a highly sensitive (100% negative predictive value) or a highly specific (100% positive predictive value) diagnostic tool for acute DAT. This also suggests that machine learning directed by populations of predictive models offer the ability to modulate the predictive effort into a specific type of error. BioMed Central 2012-03-19 /pmc/articles/PMC3338078/ /pubmed/22429742 http://dx.doi.org/10.1186/1477-5956-10-18 Text en Copyright ©2012 Neely et al; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Neely, Benjamin A
Soper, Jennifer L
Greig, Denise J
Carlin, Kevin P
Favre, Elizabeth G
Gulland, Frances MD
Almeida, Jonas S
Janech, Michael G
Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions
title Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions
title_full Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions
title_fullStr Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions
title_full_unstemmed Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions
title_short Serum profiling by MALDI-TOF mass spectrometry as a diagnostic tool for domoic acid toxicosis in California sea lions
title_sort serum profiling by maldi-tof mass spectrometry as a diagnostic tool for domoic acid toxicosis in california sea lions
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338078/
https://www.ncbi.nlm.nih.gov/pubmed/22429742
http://dx.doi.org/10.1186/1477-5956-10-18
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