Cargando…

Basal Jawed Vertebrate Phylogenomics Using Transcriptomic Data from Solexa Sequencing

The traditionally accepted relationships among basal jawed vertebrates have been challenged by some molecular phylogenetic analyses based on mitochondrial sequences. Those studies split extant gnathostomes into two monophyletic groups: tetrapods and piscine branch, including Chondrichthyes, Actinopt...

Descripción completa

Detalles Bibliográficos
Autores principales:	Chen, Ming, Zou, Ming, Yang, Lei, He, Shunping
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Public Library of Science 2012
Materias:	Research Article
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338709/ https://www.ncbi.nlm.nih.gov/pubmed/22558409 http://dx.doi.org/10.1371/journal.pone.0036256

Ejemplares similares

Probabilistic base calling of Solexa sequencing data
por: Rougemont, Jacques, et al.
Publicado: (2008)

Transcriptome Profiling of Chironomus kiinensis under Phenol Stress Using Solexa Sequencing Technology
por: Cao, Chuanwang, et al.
Publicado: (2013)

Swift: primary data analysis for the Illumina Solexa sequencing platform
por: Whiteford, Nava, et al.
Publicado: (2009)

Solexa-Sequencing Based Transcriptome Study of Plaice Skin Phenotype in Rex Rabbits (Oryctolagus cuniculus)
por: Pan, Lei, et al.
Publicado: (2015)

Transcriptome Profile Analysis of Sugarcane Responses to Sporisorium scitaminea Infection Using Solexa Sequencing Technology
por: Wu, Qibin, et al.
Publicado: (2013)

Parallel Expansions of Sox Transcription Factor Group B Predating the Diversifications of the Arthropods and Jawed Vertebrates
por: Zhong, Lei, et al.
Publicado: (2011)

MicroRNAs of Bombyx mori identified by Solexa sequencing
por: Liu, Shiping, et al.
Publicado: (2010)

BM-BC: a Bayesian method of base calling for Solexa sequence data
por: Ji, Yuan, et al.
Publicado: (2012)

Sequencing of Chloroplast Genome Using Whole Cellular DNA and Solexa Sequencing Technology
por: Wu, Jian, et al.
Publicado: (2012)

Multiplex sequencing of plant chloroplast genomes using Solexa sequencing-by-synthesis technology
por: Cronn, Richard, et al.
Publicado: (2008)

A combination of LongSAGE with Solexa sequencing is well suited to explore the depth and the complexity of transcriptome
por: Hanriot, Lucie, et al.
Publicado: (2008)

Phylogenomic analyses of bat subordinal relationships based on transcriptome data
por: Lei, Ming, et al.
Publicado: (2016)

Allele-specific expression assays using Solexa
por: Main, Bradley J, et al.
Publicado: (2009)

Identification and characterization of novel amphioxus microRNAs by Solexa sequencing
por: Chen, Xi, et al.
Publicado: (2009)

SolexaQA: At-a-glance quality assessment of Illumina second-generation sequencing data
por: Cox, Murray P, et al.
Publicado: (2010)

De novo sequencing and transcriptome analysis of the desert shrub, Ammopiptanthus mongolicus, during cold acclimation using Illumina/Solexa
por: Pang, Tao, et al.
Publicado: (2013)

Discovery of cashmere goat (Capra hircus) microRNAs in skin and hair follicles by Solexa sequencing
por: Yuan, Chao, et al.
Publicado: (2013)

Phylogenomic Perspective on the Relationships and Evolutionary History of the Major Otocephalan Lineages
por: Dai, Wei, et al.
Publicado: (2018)

Integration of Solexa sequences on an ultradense genetic map in Brassica rapa L.
por: Li, Wei, et al.
Publicado: (2011)

Identification and Differential Expression of microRNAs in Ovaries of Laying and Broody Geese (Anser cygnoides) by Solexa Sequencing
por: Xu, Qi, et al.
Publicado: (2014)

Identification and Characterization of MicroRNAs in Ovary and Testis of Nile Tilapia (Oreochromis niloticus) by Using Solexa Sequencing Technology
por: Xiao, Jun, et al.
Publicado: (2014)

Identification and Characterization of MicroRNAs in Channel Catfish (Ictalurus punctatus) by Using Solexa Sequencing Technology
por: Xu, Zhiqiang, et al.
Publicado: (2013)

Basal jawed vertebrate phylogeny inferred from multiple nuclear DNA-coded genes
por: Kikugawa, Kanae, et al.
Publicado: (2004)

Phylogenomic Analysis Resolves the Formerly Intractable Adaptive Diversification of the Endemic Clade of East Asian Cyprinidae (Cypriniformes)
por: Tao, Wenjing, et al.
Publicado: (2010)

TileQC: A system for tile-based quality control of Solexa data
por: Dolan, Peter C, et al.
Publicado: (2008)

Discovery of Porcine microRNAs in Multiple Tissues by a Solexa Deep Sequencing Approach
por: Xie, Sheng-Song, et al.
Publicado: (2011)

The Sanger FASTQ file format for sequences with quality scores, and the Solexa/Illumina FASTQ variants
por: Cock, Peter J. A., et al.
Publicado: (2010)

Identification of microRNA-Like RNAs in the Filamentous Fungus Trichoderma reesei by Solexa Sequencing
por: Kang, Kang, et al.
Publicado: (2013)

MicroRNA of the fifth-instar posterior silk gland of silkworm identified by Solexa sequencing
por: Li, Jisheng, et al.
Publicado: (2014)

ESTs analyses of Lampetra japonica liver and comparation transcriptome with the jawed vertebrates
por: Zhu, LiNa, et al.
Publicado: (2008)

The Making of Calibration Sausage Exemplified by Recalibrating the Transcriptomic Timetree of Jawed Vertebrates
por: Marjanović, David
Publicado: (2021)

Data on differentially expressed microRNAs in the liver between nonalcoholic fatty liver disease and normal Wistar rat using Solexa sequencing
por: Zhang, Deqing, et al.
Publicado: (2016)

Phylogenomic analyses reveal a molecular signature linked to subterranean adaptation in rodents
por: Du, Kang, et al.
Publicado: (2015)

Phylogenomic analysis of Balantidium ctenopharyngodoni (Ciliophora, Litostomatea) based on single-cell transcriptome sequencing
por: Sun, Zongyi, et al.
Publicado: (2017)

Solexa Sequencing of Novel and Differentially Expressed MicroRNAs in Testicular and Ovarian Tissues in Holstein Cattle
por: Huang, Jinming, et al.
Publicado: (2011)

The characters of Palaeozoic jawed vertebrates
por: Brazeau, Martin D, et al.
Publicado: (2014)

Using quality scores and longer reads improves accuracy of Solexa read mapping
por: Smith, Andrew D, et al.
Publicado: (2008)

Transcriptome sequencing and phylogenomic resolution within Spalacidae (Rodentia)
por: Lin, Gong-Hua, et al.
Publicado: (2014)

Solexa Sequencing Identification of Conserved and Novel microRNAs in Backfat of Large White and Chinese Meishan Pigs
por: Chen, Chen, et al.
Publicado: (2012)

Identification and characterization of microRNAs involved in growth of blunt snout bream (Megalobrama amblycephala) by Solexa sequencing
por: Yi, Shaokui, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_u7cto350n3tod8bp18l9ksegv3