VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program

Molecular dynamic simulation is a practical and powerful technique for analysis of protein structure. Several programs have been developed to facilitate the mentioned investigation, under them the visual molecular dynamic or VMD is the most frequently used programs. One of the beneficial properties...

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Detalles Bibliográficos
Autores principales: Falsafi-Zadeh, Sajad, Karimi, Zahra, Galehdari, Hamid
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2012
Materias:
Software
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338980/
https://www.ncbi.nlm.nih.gov/pubmed/22553393
http://dx.doi.org/10.6026/97320630008341
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author Falsafi-Zadeh, Sajad
Karimi, Zahra
Galehdari, Hamid
author_facet Falsafi-Zadeh, Sajad
Karimi, Zahra
Galehdari, Hamid
author_sort Falsafi-Zadeh, Sajad
collection PubMed
description Molecular dynamic simulation is a practical and powerful technique for analysis of protein structure. Several programs have been developed to facilitate the mentioned investigation, under them the visual molecular dynamic or VMD is the most frequently used programs. One of the beneficial properties of the VMD is its ability to be extendable by designing new plug-in. We introduce here a new facility of the VMD for distance analysis and radius of gyration of biopolymers such as protein and DNA. AVAILABILITY: The database is available for free at http://trc.ajums.ac.ir/HomePage.aspx/?TabID/=12618/&Site/=trc.ajums.ac/&Lang/=fa-IR
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spelling pubmed-33389802012-05-02 VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program Falsafi-Zadeh, Sajad Karimi, Zahra Galehdari, Hamid Bioinformation Software Molecular dynamic simulation is a practical and powerful technique for analysis of protein structure. Several programs have been developed to facilitate the mentioned investigation, under them the visual molecular dynamic or VMD is the most frequently used programs. One of the beneficial properties of the VMD is its ability to be extendable by designing new plug-in. We introduce here a new facility of the VMD for distance analysis and radius of gyration of biopolymers such as protein and DNA. AVAILABILITY: The database is available for free at http://trc.ajums.ac.ir/HomePage.aspx/?TabID/=12618/&Site/=trc.ajums.ac/&Lang/=fa-IR Biomedical Informatics 2012-04-13 /pmc/articles/PMC3338980/ /pubmed/22553393 http://dx.doi.org/10.6026/97320630008341 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Software
Falsafi-Zadeh, Sajad
Karimi, Zahra
Galehdari, Hamid
VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program
title VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program
title_full VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program
title_fullStr VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program
title_full_unstemmed VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program
title_short VMD DisRg: New User-Friendly Implement for calculation distance and radius of gyration in VMD program
title_sort vmd disrg: new user-friendly implement for calculation distance and radius of gyration in vmd program
topic Software
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3338980/
https://www.ncbi.nlm.nih.gov/pubmed/22553393
http://dx.doi.org/10.6026/97320630008341
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