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The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity

Understanding the functional effects of the wide-range of aberrant genetic characteristics associated with the human chromosome 8q24 region in cancer remains daunting due to the complexity of the locus. The most logical target for study remains the MYC proto-oncogene, a prominent resident of 8q24 th...

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Autores principales: Huppi, Konrad, Pitt, Jason J., Wahlberg, Brady M., Caplen, Natasha J.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3339310/
https://www.ncbi.nlm.nih.gov/pubmed/22558003
http://dx.doi.org/10.3389/fgene.2012.00069
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author Huppi, Konrad
Pitt, Jason J.
Wahlberg, Brady M.
Caplen, Natasha J.
author_facet Huppi, Konrad
Pitt, Jason J.
Wahlberg, Brady M.
Caplen, Natasha J.
author_sort Huppi, Konrad
collection PubMed
description Understanding the functional effects of the wide-range of aberrant genetic characteristics associated with the human chromosome 8q24 region in cancer remains daunting due to the complexity of the locus. The most logical target for study remains the MYC proto-oncogene, a prominent resident of 8q24 that was first identified more than a quarter of a century ago. However, many of the amplifications, translocation breakpoints, and viral integration sites associated with 8q24 are often found throughout regions surrounding large expanses of the MYC locus that include other transcripts. In addition, chr.8q24 is host to a number of single nucleotide polymorphisms associated with cancer risk. Yet, the lack of a direct correlation between cancer risk alleles and MYC expression has also raised the possibility that MYC is not always the target of these genetic associations. The 8q24 region has been described as a “gene desert” because of the paucity of functionally annotated genes located within this region. Here we review the evidence for the role of other loci within the 8q24 region, most of which are non-coding transcripts, either in concert with MYC or independent of MYC, as possible candidate gene targets in malignancy.
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spelling pubmed-33393102012-05-03 The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity Huppi, Konrad Pitt, Jason J. Wahlberg, Brady M. Caplen, Natasha J. Front Genet Genetics Understanding the functional effects of the wide-range of aberrant genetic characteristics associated with the human chromosome 8q24 region in cancer remains daunting due to the complexity of the locus. The most logical target for study remains the MYC proto-oncogene, a prominent resident of 8q24 that was first identified more than a quarter of a century ago. However, many of the amplifications, translocation breakpoints, and viral integration sites associated with 8q24 are often found throughout regions surrounding large expanses of the MYC locus that include other transcripts. In addition, chr.8q24 is host to a number of single nucleotide polymorphisms associated with cancer risk. Yet, the lack of a direct correlation between cancer risk alleles and MYC expression has also raised the possibility that MYC is not always the target of these genetic associations. The 8q24 region has been described as a “gene desert” because of the paucity of functionally annotated genes located within this region. Here we review the evidence for the role of other loci within the 8q24 region, most of which are non-coding transcripts, either in concert with MYC or independent of MYC, as possible candidate gene targets in malignancy. Frontiers Research Foundation 2012-04-30 /pmc/articles/PMC3339310/ /pubmed/22558003 http://dx.doi.org/10.3389/fgene.2012.00069 Text en Copyright © 2012 Huppi, Pitt, Wahlberg and Caplen. http://www.frontiersin.org/licenseagreement This is an open-access article distributed under the terms of the Creative Commons Attribution Non Commercial License, which permits non-commercial use, distribution, and reproduction in other forums, provided the original authors and source are credited.
spellingShingle Genetics
Huppi, Konrad
Pitt, Jason J.
Wahlberg, Brady M.
Caplen, Natasha J.
The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity
title The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity
title_full The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity
title_fullStr The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity
title_full_unstemmed The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity
title_short The 8q24 Gene Desert: An Oasis of Non-Coding Transcriptional Activity
title_sort 8q24 gene desert: an oasis of non-coding transcriptional activity
topic Genetics
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3339310/
https://www.ncbi.nlm.nih.gov/pubmed/22558003
http://dx.doi.org/10.3389/fgene.2012.00069
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