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Directly e-mailing authors of newly published papers encourages community curation
Much of the data within Model Organism Databases (MODs) comes from manual curation of the primary research literature. Given limited funding and an increasing density of published material, a significant challenge facing all MODs is how to efficiently and effectively prioritize the most relevant res...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Oxford University Press
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342516/ https://www.ncbi.nlm.nih.gov/pubmed/22554788 http://dx.doi.org/10.1093/database/bas024 |
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author | Bunt, Stephanie M. Grumbling, Gary B. Field, Helen I. Marygold, Steven J. Brown, Nicholas H. Millburn, Gillian H. |
author_facet | Bunt, Stephanie M. Grumbling, Gary B. Field, Helen I. Marygold, Steven J. Brown, Nicholas H. Millburn, Gillian H. |
author_sort | Bunt, Stephanie M. |
collection | PubMed |
description | Much of the data within Model Organism Databases (MODs) comes from manual curation of the primary research literature. Given limited funding and an increasing density of published material, a significant challenge facing all MODs is how to efficiently and effectively prioritize the most relevant research papers for detailed curation. Here, we report recent improvements to the triaging process used by FlyBase. We describe an automated method to directly e-mail corresponding authors of new papers, requesting that they list the genes studied and indicate (‘flag’) the types of data described in the paper using an online tool. Based on the author-assigned flags, papers are then prioritized for detailed curation and channelled to appropriate curator teams for full data extraction. The overall response rate has been 44% and the flagging of data types by authors is sufficiently accurate for effective prioritization of papers. In summary, we have established a sustainable community curation program, with the result that FlyBase curators now spend less time triaging and can devote more effort to the specialized task of detailed data extraction. Database URL: http://flybase.org/ |
format | Online Article Text |
id | pubmed-3342516 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Oxford University Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-33425162012-05-03 Directly e-mailing authors of newly published papers encourages community curation Bunt, Stephanie M. Grumbling, Gary B. Field, Helen I. Marygold, Steven J. Brown, Nicholas H. Millburn, Gillian H. Database (Oxford) Original Article Much of the data within Model Organism Databases (MODs) comes from manual curation of the primary research literature. Given limited funding and an increasing density of published material, a significant challenge facing all MODs is how to efficiently and effectively prioritize the most relevant research papers for detailed curation. Here, we report recent improvements to the triaging process used by FlyBase. We describe an automated method to directly e-mail corresponding authors of new papers, requesting that they list the genes studied and indicate (‘flag’) the types of data described in the paper using an online tool. Based on the author-assigned flags, papers are then prioritized for detailed curation and channelled to appropriate curator teams for full data extraction. The overall response rate has been 44% and the flagging of data types by authors is sufficiently accurate for effective prioritization of papers. In summary, we have established a sustainable community curation program, with the result that FlyBase curators now spend less time triaging and can devote more effort to the specialized task of detailed data extraction. Database URL: http://flybase.org/ Oxford University Press 2012-05-02 /pmc/articles/PMC3342516/ /pubmed/22554788 http://dx.doi.org/10.1093/database/bas024 Text en © The Author(s) 2012. Published by Oxford University Press. http://creativecommons.org/licenses/by-nc/3.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution Non-Commercial License (http://creativecommons.org/licenses/by-nc/3.0), which permits unrestricted non-commercial use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Original Article Bunt, Stephanie M. Grumbling, Gary B. Field, Helen I. Marygold, Steven J. Brown, Nicholas H. Millburn, Gillian H. Directly e-mailing authors of newly published papers encourages community curation |
title | Directly e-mailing authors of newly published papers encourages community curation |
title_full | Directly e-mailing authors of newly published papers encourages community curation |
title_fullStr | Directly e-mailing authors of newly published papers encourages community curation |
title_full_unstemmed | Directly e-mailing authors of newly published papers encourages community curation |
title_short | Directly e-mailing authors of newly published papers encourages community curation |
title_sort | directly e-mailing authors of newly published papers encourages community curation |
topic | Original Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3342516/ https://www.ncbi.nlm.nih.gov/pubmed/22554788 http://dx.doi.org/10.1093/database/bas024 |
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