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Combining Two Technologies for Full Genome Sequencing of Human

At present, the new technologies of DNA sequencing are rapidly developing allowing quick and efficient characterisation of organisms at the level of the genome structure. In this study, the whole genome sequencing of a human (Russian man) was performed using two technologies currently present on the...

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Autores principales: Skryabin, K.G., Prokhortchouk, E.B., Mazur, A.M., Boulygina, E.S., Tsygankova, S.V., Nedoluzhko, A.V., Rastorguev, S.M., Matveev, V.B., Chekanov, N.N., D.A., Goranskaya, Teslyuk, A.B., Gruzdeva, N.M., Velikhov, V.E., Zaridze, D.G., Kovalchuk, M.V.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: A.I. Gordeyev 2009
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3347526/
https://www.ncbi.nlm.nih.gov/pubmed/22649622
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author Skryabin, K.G.
Prokhortchouk, E.B.
Mazur, A.M.
Boulygina, E.S.
Tsygankova, S.V.
Nedoluzhko, A.V.
Rastorguev, S.M.
Matveev, V.B.
Chekanov, N.N.
D.A., Goranskaya
Teslyuk, A.B.
Gruzdeva, N.M.
Velikhov, V.E.
Zaridze, D.G.
Kovalchuk, M.V.
author_facet Skryabin, K.G.
Prokhortchouk, E.B.
Mazur, A.M.
Boulygina, E.S.
Tsygankova, S.V.
Nedoluzhko, A.V.
Rastorguev, S.M.
Matveev, V.B.
Chekanov, N.N.
D.A., Goranskaya
Teslyuk, A.B.
Gruzdeva, N.M.
Velikhov, V.E.
Zaridze, D.G.
Kovalchuk, M.V.
author_sort Skryabin, K.G.
collection PubMed
description At present, the new technologies of DNA sequencing are rapidly developing allowing quick and efficient characterisation of organisms at the level of the genome structure. In this study, the whole genome sequencing of a human (Russian man) was performed using two technologies currently present on the market - Sequencing by Oligonucleotide Ligation and Detection (SOLiD™) (Applied Biosystems) and sequencing technologies of molecular clusters using fluorescently labeled precursors (Illumina). The total number of generated data resulted in 108.3 billion base pairs (60.2 billion from Illumina technology and 48.1 billion from SOLiD technology). Statistics performed on reads generated by GAII and SOLiD showed that they covered 75% and 96% of the genome respectively. Short polymorphic regions were detected with comparable accuracy however, the absolute amount of them revealed by SOLiD was several times less than by GAII. Optimal algorithm for using the latest methods of sequencing was established for the analysis of individual human genomes. The study is the first Russian effort towards whole human genome sequencing.
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spelling pubmed-33475262012-05-30 Combining Two Technologies for Full Genome Sequencing of Human Skryabin, K.G. Prokhortchouk, E.B. Mazur, A.M. Boulygina, E.S. Tsygankova, S.V. Nedoluzhko, A.V. Rastorguev, S.M. Matveev, V.B. Chekanov, N.N. D.A., Goranskaya Teslyuk, A.B. Gruzdeva, N.M. Velikhov, V.E. Zaridze, D.G. Kovalchuk, M.V. Acta Naturae Research Article At present, the new technologies of DNA sequencing are rapidly developing allowing quick and efficient characterisation of organisms at the level of the genome structure. In this study, the whole genome sequencing of a human (Russian man) was performed using two technologies currently present on the market - Sequencing by Oligonucleotide Ligation and Detection (SOLiD™) (Applied Biosystems) and sequencing technologies of molecular clusters using fluorescently labeled precursors (Illumina). The total number of generated data resulted in 108.3 billion base pairs (60.2 billion from Illumina technology and 48.1 billion from SOLiD technology). Statistics performed on reads generated by GAII and SOLiD showed that they covered 75% and 96% of the genome respectively. Short polymorphic regions were detected with comparable accuracy however, the absolute amount of them revealed by SOLiD was several times less than by GAII. Optimal algorithm for using the latest methods of sequencing was established for the analysis of individual human genomes. The study is the first Russian effort towards whole human genome sequencing. A.I. Gordeyev 2009-10 /pmc/articles/PMC3347526/ /pubmed/22649622 Text en Copyright © 2009 Park-media Ltd. http://creativecommons.org/licenses/by/2.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research Article
Skryabin, K.G.
Prokhortchouk, E.B.
Mazur, A.M.
Boulygina, E.S.
Tsygankova, S.V.
Nedoluzhko, A.V.
Rastorguev, S.M.
Matveev, V.B.
Chekanov, N.N.
D.A., Goranskaya
Teslyuk, A.B.
Gruzdeva, N.M.
Velikhov, V.E.
Zaridze, D.G.
Kovalchuk, M.V.
Combining Two Technologies for Full Genome Sequencing of Human
title Combining Two Technologies for Full Genome Sequencing of Human
title_full Combining Two Technologies for Full Genome Sequencing of Human
title_fullStr Combining Two Technologies for Full Genome Sequencing of Human
title_full_unstemmed Combining Two Technologies for Full Genome Sequencing of Human
title_short Combining Two Technologies for Full Genome Sequencing of Human
title_sort combining two technologies for full genome sequencing of human
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3347526/
https://www.ncbi.nlm.nih.gov/pubmed/22649622
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