Cargando…

Deciphering the Plant Splicing Code: Experimental and Computational Approaches for Predicting Alternative Splicing and Splicing Regulatory Elements

Extensive alternative splicing (AS) of precursor mRNAs (pre-mRNAs) in multicellular eukaryotes increases the protein-coding capacity of a genome and allows novel ways to regulate gene expression. In flowering plants, up to 48% of intron-containing genes exhibit AS. However, the full extent of AS in...

Descripción completa

Detalles Bibliográficos
Autores principales:	Reddy, Anireddy S. N., Rogers, Mark F., Richardson, Dale N., Hamilton, Michael, Ben-Hur, Asa
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Frontiers Research Foundation 2012
Materias:	Plant Science
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3355732/ https://www.ncbi.nlm.nih.gov/pubmed/22645572 http://dx.doi.org/10.3389/fpls.2012.00018

Ejemplares similares

SpliceGrapher: detecting patterns of alternative splicing from RNA-Seq data in the context of gene models and EST data
por: Rogers, Mark F, et al.
Publicado: (2012)

Genome-wide analysis of alternative splicing in Chlamydomonas reinhardtii
por: Labadorf, Adam, et al.
Publicado: (2010)

Abiotic Stresses Modulate Landscape of Poplar Transcriptome via Alternative Splicing, Differential Intron Retention, and Isoform Ratio Switching
por: Filichkin, Sergei A., et al.
Publicado: (2018)

Comparative Analysis of Serine/Arginine-Rich Proteins across 27 Eukaryotes: Insights into Sub-Family Classification and Extent of Alternative Splicing
por: Richardson, Dale N., et al.
Publicado: (2011)

Alternative Splicing and Protein Diversity: Plants Versus Animals
por: Chaudhary, Saurabh, et al.
Publicado: (2019)

Stress-Induced Changes in Alternative Splicing Landscape in Rice: Functional Significance of Splice Isoforms in Stress Tolerance
por: Ganie, Showkat Ahmad, et al.
Publicado: (2021)

Alternative splicing: transcriptional regulatory network in agroforestry
por: Hussain, Syed Sarfaraz, et al.
Publicado: (2023)

Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs
por: Dwivedi, Sangam L., et al.
Publicado: (2023)

Evolution of Alternative Splicing in Eudicots
por: Ling, Zhihao, et al.
Publicado: (2019)

Alternative Splicing and Transcription Elongation in Plants
por: Godoy Herz, Micaela A., et al.
Publicado: (2019)

Editorial: Alternative Splicing Regulation in Plants
por: Petrillo, Ezequiel, et al.
Publicado: (2020)

Alternative splicing at NAGNAG acceptors in Arabidopsis thaliana SR and SR-related protein-coding genes
por: Schindler, Stefanie, et al.
Publicado: (2008)

Cold-Dependent Expression and Alternative Splicing of Arabidopsis Long Non-coding RNAs
por: Calixto, Cristiane P. G., et al.
Publicado: (2019)

Deep Splicing Code: Classifying Alternative Splicing Events Using Deep Learning
por: Louadi, Zakaria, et al.
Publicado: (2019)

Splicing and alternative splicing in rice and humans
por: E, Zhiguo, et al.
Publicado: (2013)

Modeling splicing outcome by combining 5′ss strength and splicing regulatory elements
por: Müller, Lisa, et al.
Publicado: (2022)

Strategies for Identifying RNA Splicing Regulatory Motifs and Predicting Alternative Splicing Events
por: Holste, Dirk, et al.
Publicado: (2008)

The Genetic Regulation of Alternative Splicing in Populus deltoides
por: Noble, Jerald D., et al.
Publicado: (2020)

Alternative Splicing and DNA Damage Response in Plants
por: Nimeth, Barbara Anna, et al.
Publicado: (2020)

Genome-Wide Identification of Splicing Quantitative Trait Loci (sQTLs) in Diverse Ecotypes of Arabidopsis thaliana
por: Khokhar, Waqas, et al.
Publicado: (2019)

A Genomic View of Alternative Splicing of Long Non-coding RNAs during Rice Seed Development Reveals Extensive Splicing and lncRNA Gene Families
por: Kiegle, Edward A., et al.
Publicado: (2018)

Role of Arabidopsis Splicing factor SF1 in Temperature-Responsive Alternative Splicing of FLM pre-mRNA
por: Lee, Keh Chien, et al.
Publicado: (2020)

Does co-transcriptional regulation of alternative splicing mediate plant stress responses?
por: Jabre, Ibtissam, et al.
Publicado: (2019)

Coding potential of the products of alternative splicing in human
por: Leoni, Guido, et al.
Publicado: (2011)

Development of an in vitro pre-mRNA splicing assay using plant nuclear extract
por: Albaqami, Mohammed, et al.
Publicado: (2018)

Alternative Splicing as a Regulator of Early Plant Development
por: Szakonyi, Dóra, et al.
Publicado: (2018)

A Comprehensive Analysis of Alternative Splicing in Paleopolyploid Maize
por: Mei, Wenbin, et al.
Publicado: (2017)

Alternative Splicing Enhances the Transcriptome Complexity of Liriodendron chinense
por: Tu, Zhonghua, et al.
Publicado: (2020)

Rapid Regulation of Alternative Splicing in Response to Environmental Stresses
por: Liu, Xiao-Xiao, et al.
Publicado: (2022)

Editorial: Regulation of alternative splicing in plant stress responses
por: Mandadi, Kranthi K., et al.
Publicado: (2023)

Alternative splicing in ABA signaling during seed germination
por: Sybilska, Ewa, et al.
Publicado: (2023)

Advances in alternative splicing identification: deep learning and pantranscriptome
por: Shen, Fei, et al.
Publicado: (2023)

SWAP1-SFPS-RRC1 splicing factor complex modulates pre-mRNA splicing to promote photomorphogenesis in Arabidopsis
por: Kathare, Praveen Kumar, et al.
Publicado: (2022)

Alternative Splicing of TAF6: Downstream Transcriptome Impacts and Upstream RNA Splice Control Elements
por: Kamtchueng, Catherine, et al.
Publicado: (2014)

BRCA1 Exon 11, a CERES (Composite Regulatory Element of Splicing) Element Involved in Splice Regulation
por: Tammaro, Claudia, et al.
Publicado: (2014)

Cross-kingdom patterns of alternative splicing and splice recognition
por: McGuire, Abigail M, et al.
Publicado: (2008)

Alternative splicing regulation at tandem 3′ splice sites
por: Akerman, Martin, et al.
Publicado: (2006)

Assessing conservation of alternative splicing with evolutionary splicing graphs
por: Zea, Diego Javier, et al.
Publicado: (2021)

Rbm20 regulates titin alternative splicing as a splicing repressor
por: Li, Shijun, et al.
Publicado: (2013)

Overlapping splicing regulatory motifs—combinatorial effects on splicing
por: Goren, Amir, et al.
Publicado: (2010)

Cannot write session to /tmp/vufind_sessions/sess_3s7emmc5juhvq34m0kkodcbvq5