Cargando…

Stable stem enabled Shannon entropies distinguish non-coding RNAs from random backgrounds

BACKGROUND: The computational identification of RNAs in genomic sequences requires the identification of signals of RNA sequences. Shannon base pairing entropy is an indicator for RNA secondary structure fold certainty in detection of structural, non-coding RNAs (ncRNAs). Under the Boltzmann ensembl...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wang, Yingfeng, Manzour, Amir, Shareghi, Pooya, Shaw, Timothy I, Li, Ying-Wai, Malmberg, Russell L, Cai, Liming
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3358654/ https://www.ncbi.nlm.nih.gov/pubmed/22537005 http://dx.doi.org/10.1186/1471-2105-13-S5-S1

Ejemplares similares

Simultaneous prediction of RNA secondary structure and helix coaxial stacking
por: Shareghi, Pooya, et al.
Publicado: (2012)

First Digits’ Shannon Entropy
por: Kreiner, Welf Alfred
Publicado: (2022)

Universality and Shannon entropy of codon usage
por: Frappat, L, et al.
Publicado: (2003)

Controlling the Shannon Entropy of Quantum Systems
por: Xing, Yifan, et al.
Publicado: (2013)

Software Code Smell Prediction Model Using Shannon, Rényi and Tsallis Entropies
por: Gupta, Aakanshi, et al.
Publicado: (2018)

Global Seismic Nowcasting With Shannon Information Entropy
por: Rundle, John B., et al.
Publicado: (2019)

New Estimations for Shannon and Zipf–Mandelbrot Entropies
por: Adil Khan, Muhammad, et al.
Publicado: (2018)

Shannon Entropy Loss in Mixed-Radix Conversions
por: Vennos, Amy, et al.
Publicado: (2021)

Voronoi Tessellations and the Shannon Entropy of the Pentagonal Tilings
por: Bormashenko, Edward, et al.
Publicado: (2023)

Shannon Entropy: An Econophysical Approach to Cryptocurrency Portfolios
por: Rodriguez-Rodriguez, Noé, et al.
Publicado: (2022)

Expected Shannon Entropy and Shannon Differentiation between Subpopulations for Neutral Genes under the Finite Island Model
por: Chao, Anne, et al.
Publicado: (2015)

Origin and Characteristics of High Shannon Entropy at the Pivot of Locally Stable Rotors: Insights from Computational Simulation
por: Ganesan, Anand N., et al.
Publicado: (2014)

Shannon Entropy as an Indicator for Sorting Processes in Hydrothermal Systems
por: van Ruitenbeek, Frank J. A., et al.
Publicado: (2020)

The Ordering of Shannon Entropies for the Multivariate Distributions and Distributions of Eigenvalues
por: Tsai, Ming-Tien, et al.
Publicado: (2019)

A Review of Shannon and Differential Entropy Rate Estimation
por: Feutrill, Andrew, et al.
Publicado: (2021)

Alternative Entropy Measures and Generalized Khinchin–Shannon Inequalities
por: Mondaini, Rubem P., et al.
Publicado: (2021)

Asymptotic Normality for Plug-In Estimators of Generalized Shannon’s Entropy
por: Zhang, Jialin, et al.
Publicado: (2022)

Spatial distribution of the Shannon entropy for mass spectrometry imaging
por: Xu, Lili, et al.
Publicado: (2023)

Shannon Entropy of Ramsey Graphs with up to Six Vertices
por: Frenkel, Mark, et al.
Publicado: (2023)

Application of Positional Entropy to Fast Shannon Entropy Estimation for Samples of Digital Signals
por: Cholewa, Marcin, et al.
Publicado: (2020)

Promoter features related to tissue specificity as measured by Shannon entropy
por: Schug, Jonathan, et al.
Publicado: (2005)

RepSeq Data Representativeness and Robustness Assessment by Shannon Entropy
por: Chaara, Wahiba, et al.
Publicado: (2018)

Maximal Shannon entropy in the vicinity of an exceptional point in an open microcavity
por: Park, Kyu-Won, et al.
Publicado: (2020)

Shannon Entropy in Configuration Space for Ni-Like Isoelectronic Sequence
por: Wan, Jianjie, et al.
Publicado: (2019)

Weighted multifractal cross-correlation analysis based on Shannon entropy
por: Xiong, Hui, et al.
Publicado: (2016)

Shannon entropy approach reveals relevant genes in Alzheimer’s disease
por: Monaco, Alfonso, et al.
Publicado: (2019)

Quantification of fractal dimension and Shannon’s entropy in histological diagnosis of prostate cancer
por: de Arruda, Pedro Francisco Ferraz, et al.
Publicado: (2013)

A Dynamical Systems-Based Hierarchy for Shannon, Metric and Topological Entropy
por: Addabbo, Raymond, et al.
Publicado: (2019)

Characteristics of Shannon’s Information Entropy of Atomic States in Strongly Coupled Plasma
por: Lee, Myoung-Jae, et al.
Publicado: (2020)

Ranking DMUs by Combining Cross-Efficiency Scores Based on Shannon’s Entropy
por: Lee, Yueh-Chiang
Publicado: (2019)

Signaling Complexity Measured by Shannon Entropy and Its Application in Personalized Medicine
por: Conforte, Alessandra J., et al.
Publicado: (2019)

Shannon entropy as a metric for conditional gene expression in Neurospora crassa
por: Ameri, Abigail J, et al.
Publicado: (2021)

Quantifying Information via Shannon Entropy in Spatially Structured Optical Beams
por: Solyanik-Gorgone, Maria, et al.
Publicado: (2021)

Shannon Entropy and Diffusion Coefficient in Parity-Time Symmetric Quantum Walks
por: Tian, Zhiyu, et al.
Publicado: (2021)

Tracking volcanic explosions using Shannon entropy at Volcán de Colima
por: Rey-Devesa, Pablo, et al.
Publicado: (2023)

Is the Voronoi Entropy a True Entropy? Comments on “Entropy, Shannon’s Measure of Information and Boltzmann’s H-Theorem”, Entropy 2017, 19, 48
por: Bormashenko, Edward, et al.
Publicado: (2019)

Comparison of background EEG activity of different groups of patients with idiopathic epilepsy using Shannon spectral entropy and cluster-based permutation statistical testing
por: Urigüen, Jose Antonio, et al.
Publicado: (2017)

Von Neumann and Shannon-Wehrl entropy for squeezed states and cosmological particle production
por: Gasperini, M., et al.
Publicado: (1995)

Automatic online detection of atrial fibrillation based on symbolic dynamics and Shannon entropy
por: Zhou, Xiaolin, et al.
Publicado: (2014)

Shannon entropy of brain functional complex networks under the influence of the psychedelic Ayahuasca
por: Viol, A., et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_5dnd4ms26v61038ls8pc5t6kiq