Cargando…

PAIR: polymorphic Alu insertion recognition

BACKGROUND: Alu polymorphisms are some of the most common polymorphisms in the genome, yet few methods have been developed for their detection. METHODS: We present algorithms to discover Alu polymorphisms using paired-end high throughput sequencing data from multiple individuals. We consider the pro...

Descripción completa

Detalles Bibliográficos
Autores principales:	Sveinbjörnsson, Jón Ingi, Halldórsson, Bjarni V
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3358660/ https://www.ncbi.nlm.nih.gov/pubmed/22537046 http://dx.doi.org/10.1186/1471-2105-13-S6-S7

Ejemplares similares

PopAlu: population-scale detection of Alu polymorphisms
por: Qian, Yu, et al.
Publicado: (2015)

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions
por: Puurand, Tarmo, et al.
Publicado: (2019)

Alu Insertion Polymorphisms as Evidence for Population Structure in Baboons
por: Steely, Cody J., et al.
Publicado: (2017)

Owl Monkey Alu Insertion Polymorphisms and Aotus Phylogenetics
por: Storer, Jessica M., et al.
Publicado: (2022)

Insertion and deletion polymorphisms of the ancient AluS family in the human genome
por: Kryatova, Maria S., et al.
Publicado: (2017)

A computational reconstruction of Papio phylogeny using Alu insertion polymorphisms
por: Jordan, Vallmer E., et al.
Publicado: (2018)

Alu pair exclusions in the human genome
por: Cook, George W, et al.
Publicado: (2011)

Polymorphisms in pattern recognition receptors and their relationship to infectious disease susceptibility in pigs
por: Uenishi, Hirohide, et al.
Publicado: (2011)

Polymorphic Alu Insertion/Deletion in Different Caste and Tribal Populations from South India
por: Chinniah, Rathika, et al.
Publicado: (2016)

Association of the Alu insertion polymorphism in the progesterone receptor gene with breast cancer in a Mexican population
por: Gallegos-Arreola, Martha Patricia, et al.
Publicado: (2015)

Correction: Polymorphic Alu Insertion/Deletion in Different Caste and Tribal Populations from South India
por: Chinniah, Rathika, et al.
Publicado: (2016)

The Alu-insertion progesterone receptor gene polymorphism is not associated with breast cancer: a meta-analysis
por: Yao, Jun, et al.
Publicado: (2018)

Alu insertion polymorphisms shared by Papio baboons and Theropithecus gelada reveal an intertwined common ancestry
por: Walker, Jerilyn A., et al.
Publicado: (2019)

Alu insertion variants alter mRNA splicing
por: Payer, Lindsay M, et al.
Publicado: (2019)

Alu insertion variants alter gene transcript levels
por: Payer, Lindsay M., et al.
Publicado: (2021)

DELISHUS: an efficient and exact algorithm for genome-wide detection of deletion polymorphism in autism
por: Aguiar, Derek, et al.
Publicado: (2012)

Research of the origin of a particular Tunisian group using a physical marker and Alu insertion polymorphisms
por: El Moncer, Wifak, et al.
Publicado: (2011)

A method to detect single-nucleotide polymorphisms accounting for a linkage signal using covariate-based affected relative pair linkage analysis
por: Song, Yeunjoo E, et al.
Publicado: (2011)

Detecting Alu insertions from high-throughput sequencing data
por: David, Matei, et al.
Publicado: (2013)

Rescuing Alu: Recovery of New Inserts Shows LINE-1 Preserves Alu Activity through A-Tail Expansion
por: Wagstaff, Bradley J., et al.
Publicado: (2012)

Novel polymorphic AluYb8 insertion in the WNK1 gene is associated with blood pressure variation in Europeans
por: Putku, Margus, et al.
Publicado: (2011)

Which strategy is better for linkage analysis: single-nucleotide polymorphisms or microsatellites? Evaluation by identity-by-state – identity-by-descent transformation affected sib-pair method on GAW14 data
por: Yue, Qingqi, et al.
Publicado: (2005)

Frequency of Alu insertions within the ACE and PR loci in Northwestern Mexicans
por: Navarrete, Hilda P., et al.
Publicado: (2017)

Assembly of non-unique insertion content using next-generation sequencing
por: Parrish, Nathaniel, et al.
Publicado: (2011)

Identification of Alternative Variants and Insertion of the Novel Polymorphic AluYl17 in TSEN54 Gene during Primate Evolution
por: Lee, Ja-Rang, et al.
Publicado: (2016)

AluYb8 insertion polymorphism in the MUTYH gene impairs mitochondrial DNA maintenance and affects the age of onset of IPF
por: Zhou, Wei, et al.
Publicado: (2019)

Identification of a functional 339 bp Alu insertion polymorphism in the schizophrenia-associated locus at 10q24.32
por: Yang, Zhi-Hui, et al.
Publicado: (2020)

An antisense Alu transposon insertion/deletion polymorphism of ALDH1A1 may functionally associate with Parkinson’s disease
por: Fan, Hui-Hui, et al.
Publicado: (2022)

Approximating the edit distance for genomes with duplicate genes under DCJ, insertion and deletion
por: Shao, Mingfu, et al.
Publicado: (2012)

Development of a database system for mapping insertional mutations onto the mouse genome with large-scale experimental data
por: Yang, Wenwei, et al.
Publicado: (2009)

Reconstructing cancer genomes from paired-end sequencing data
por: Oesper, Layla, et al.
Publicado: (2012)

A new transmission test for affected sib-pair families
por: Xu, Hongyan, et al.
Publicado: (2007)

DBBP: database of binding pairs in protein-nucleic acid interactions
por: Park, Byungkyu, et al.
Publicado: (2014)

Incorporating quantitative variables into linkage analysis using affected sib pairs
por: Chiu, Yen-Feng, et al.
Publicado: (2007)

Joint modeling of linkage and association using affected sib-pair data
por: Chen, Ming-Huei, et al.
Publicado: (2007)

A statistical method for adjusting covariates in linkage analysis with sib pairs
por: Wu, Colin O, et al.
Publicado: (2003)

PEAT: an intelligent and efficient paired-end sequencing adapter trimming algorithm
por: Li, Yun-Lung, et al.
Publicado: (2015)

Characterization of the Relationship between APOBEC3B Deletion and ACE Alu Insertion
por: Wang, Kang, et al.
Publicado: (2013)

PCS/MVA syndrome caused by an Alu insertion in the BUB1B gene
por: Kato, Maki, et al.
Publicado: (2017)

Alu-Mediated Insertions in the DMD Gene: A Difficult Puzzle to Interpret Clinically
por: Torella, Annalaura, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_1e7iqd0g9o3a68olu2e4lvnau7