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Investigation of the Role of Arg301 Identified in the X-ray Structure of Phosphite Dehydrogenase
[Image: see text] Phosphite dehydrogenase (PTDH) from Pseudomonas stutzeri catalyzes the nicotinamide adenine dinucleotide-dependent oxidation of phosphite to phosphate. The enzyme belongs to the family of d-hydroxy acid dehydrogenases (DHDHs). A search of the protein databases uncovered many additi...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
American Chemical
Society
2012
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Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3361975/ https://www.ncbi.nlm.nih.gov/pubmed/22564138 http://dx.doi.org/10.1021/bi201691w |
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author | Hung, John E. Fogle, Emily J. Christman, Harry D. Johannes, Tyler W. Zhao, Huimin Metcalf, William W. van der Donk, Wilfred A. |
author_facet | Hung, John E. Fogle, Emily J. Christman, Harry D. Johannes, Tyler W. Zhao, Huimin Metcalf, William W. van der Donk, Wilfred A. |
author_sort | Hung, John E. |
collection | PubMed |
description | [Image: see text] Phosphite dehydrogenase (PTDH) from Pseudomonas stutzeri catalyzes the nicotinamide adenine dinucleotide-dependent oxidation of phosphite to phosphate. The enzyme belongs to the family of d-hydroxy acid dehydrogenases (DHDHs). A search of the protein databases uncovered many additional putative phosphite dehydrogenases. The genes encoding four diverse candidates were cloned and expressed, and the enzymes were purified and characterized. All oxidized phosphite to phosphate and had similar kinetic parameters despite a low level of pairwise sequence identity (39–72%). A recent crystal structure identified Arg301 as a residue in the active site that has not been investigated previously. Arg301 is fully conserved in the enzymes shown here to be PTDHs, but the residue is not conserved in other DHDHs. Kinetic analysis of site-directed mutants of this residue shows that it is important for efficient catalysis, with an ∼100-fold decrease in k(cat) and an almost 700-fold increase in K(m,phosphite) for the R301A mutant. Interestingly, the R301K mutant displayed a slightly higher k(cat) than the parent PTDH, and a more modest increase in K(m) for phosphite (nearly 40-fold). Given these results, Arg301 may be involved in the binding and orientation of the phosphite substrate and/or play a catalytic role via electrostatic interactions. Three other residues in the active site region that are conserved in the PTDH orthologs but not DHDHs were identified (Trp134, Tyr139, and Ser295). The importance of these residues was also investigated by site-directed mutagenesis. All of the mutants had k(cat) values similar to that of the wild-type enzyme, indicating these residues are not important for catalysis. |
format | Online Article Text |
id | pubmed-3361975 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | American Chemical
Society |
record_format | MEDLINE/PubMed |
spelling | pubmed-33619752012-05-29 Investigation of the Role of Arg301 Identified in the X-ray Structure of Phosphite Dehydrogenase Hung, John E. Fogle, Emily J. Christman, Harry D. Johannes, Tyler W. Zhao, Huimin Metcalf, William W. van der Donk, Wilfred A. Biochemistry [Image: see text] Phosphite dehydrogenase (PTDH) from Pseudomonas stutzeri catalyzes the nicotinamide adenine dinucleotide-dependent oxidation of phosphite to phosphate. The enzyme belongs to the family of d-hydroxy acid dehydrogenases (DHDHs). A search of the protein databases uncovered many additional putative phosphite dehydrogenases. The genes encoding four diverse candidates were cloned and expressed, and the enzymes were purified and characterized. All oxidized phosphite to phosphate and had similar kinetic parameters despite a low level of pairwise sequence identity (39–72%). A recent crystal structure identified Arg301 as a residue in the active site that has not been investigated previously. Arg301 is fully conserved in the enzymes shown here to be PTDHs, but the residue is not conserved in other DHDHs. Kinetic analysis of site-directed mutants of this residue shows that it is important for efficient catalysis, with an ∼100-fold decrease in k(cat) and an almost 700-fold increase in K(m,phosphite) for the R301A mutant. Interestingly, the R301K mutant displayed a slightly higher k(cat) than the parent PTDH, and a more modest increase in K(m) for phosphite (nearly 40-fold). Given these results, Arg301 may be involved in the binding and orientation of the phosphite substrate and/or play a catalytic role via electrostatic interactions. Three other residues in the active site region that are conserved in the PTDH orthologs but not DHDHs were identified (Trp134, Tyr139, and Ser295). The importance of these residues was also investigated by site-directed mutagenesis. All of the mutants had k(cat) values similar to that of the wild-type enzyme, indicating these residues are not important for catalysis. American Chemical Society 2012-05-07 2012-05-29 /pmc/articles/PMC3361975/ /pubmed/22564138 http://dx.doi.org/10.1021/bi201691w Text en Copyright © 2012 American Chemical Society http://pubs.acs.org This is an open-access article distributed under the ACS AuthorChoice Terms & Conditions. Any use of this article, must conform to the terms of that license which are available at http://pubs.acs.org. |
spellingShingle | Hung, John E. Fogle, Emily J. Christman, Harry D. Johannes, Tyler W. Zhao, Huimin Metcalf, William W. van der Donk, Wilfred A. Investigation of the Role of Arg301 Identified in the X-ray Structure of Phosphite Dehydrogenase |
title | Investigation of the Role
of Arg301 Identified in
the X-ray Structure of Phosphite Dehydrogenase |
title_full | Investigation of the Role
of Arg301 Identified in
the X-ray Structure of Phosphite Dehydrogenase |
title_fullStr | Investigation of the Role
of Arg301 Identified in
the X-ray Structure of Phosphite Dehydrogenase |
title_full_unstemmed | Investigation of the Role
of Arg301 Identified in
the X-ray Structure of Phosphite Dehydrogenase |
title_short | Investigation of the Role
of Arg301 Identified in
the X-ray Structure of Phosphite Dehydrogenase |
title_sort | investigation of the role
of arg301 identified in
the x-ray structure of phosphite dehydrogenase |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3361975/ https://www.ncbi.nlm.nih.gov/pubmed/22564138 http://dx.doi.org/10.1021/bi201691w |
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