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Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi
Prior to the recent discovery of Ignavibacterium album (I. album), anaerobic photoautotrophic green sulfur bacteria (GSB) were the only members of the bacterial phylum Chlorobi that had been grown axenically. In contrast to GSB, sequence analysis of the 3.7-Mbp genome of I. album shows that this rec...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
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Frontiers Research Foundation
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362086/ https://www.ncbi.nlm.nih.gov/pubmed/22661972 http://dx.doi.org/10.3389/fmicb.2012.00185 |
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author | Liu, Zhenfeng Frigaard, Niels-Ulrik Vogl, Kajetan Iino, Takao Ohkuma, Moriya Overmann, Jörg Bryant, Donald A. |
author_facet | Liu, Zhenfeng Frigaard, Niels-Ulrik Vogl, Kajetan Iino, Takao Ohkuma, Moriya Overmann, Jörg Bryant, Donald A. |
author_sort | Liu, Zhenfeng |
collection | PubMed |
description | Prior to the recent discovery of Ignavibacterium album (I. album), anaerobic photoautotrophic green sulfur bacteria (GSB) were the only members of the bacterial phylum Chlorobi that had been grown axenically. In contrast to GSB, sequence analysis of the 3.7-Mbp genome of I. album shows that this recently described member of the phylum Chlorobi is a chemoheterotroph with a versatile metabolism. I. album lacks genes for photosynthesis and sulfur oxidation but has a full set of genes for flagella and chemotaxis. The occurrence of genes for multiple electron transfer complexes suggests that I. album is capable of organoheterotrophy under both oxic and anoxic conditions. The occurrence of genes encoding enzymes for CO(2) fixation as well as other enzymes of the reductive TCA cycle suggests that mixotrophy may be possible under certain growth conditions. However, known biosynthetic pathways for several amino acids are incomplete; this suggests that I. album is dependent upon on exogenous sources of these metabolites or employs novel biosynthetic pathways. Comparisons of I. album and other members of the phylum Chlorobi suggest that the physiology of the ancestors of this phylum might have been quite different from that of modern GSB. |
format | Online Article Text |
id | pubmed-3362086 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Frontiers Research Foundation |
record_format | MEDLINE/PubMed |
spelling | pubmed-33620862012-06-01 Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi Liu, Zhenfeng Frigaard, Niels-Ulrik Vogl, Kajetan Iino, Takao Ohkuma, Moriya Overmann, Jörg Bryant, Donald A. Front Microbiol Microbiology Prior to the recent discovery of Ignavibacterium album (I. album), anaerobic photoautotrophic green sulfur bacteria (GSB) were the only members of the bacterial phylum Chlorobi that had been grown axenically. In contrast to GSB, sequence analysis of the 3.7-Mbp genome of I. album shows that this recently described member of the phylum Chlorobi is a chemoheterotroph with a versatile metabolism. I. album lacks genes for photosynthesis and sulfur oxidation but has a full set of genes for flagella and chemotaxis. The occurrence of genes for multiple electron transfer complexes suggests that I. album is capable of organoheterotrophy under both oxic and anoxic conditions. The occurrence of genes encoding enzymes for CO(2) fixation as well as other enzymes of the reductive TCA cycle suggests that mixotrophy may be possible under certain growth conditions. However, known biosynthetic pathways for several amino acids are incomplete; this suggests that I. album is dependent upon on exogenous sources of these metabolites or employs novel biosynthetic pathways. Comparisons of I. album and other members of the phylum Chlorobi suggest that the physiology of the ancestors of this phylum might have been quite different from that of modern GSB. Frontiers Research Foundation 2012-05-29 /pmc/articles/PMC3362086/ /pubmed/22661972 http://dx.doi.org/10.3389/fmicb.2012.00185 Text en Copyright © 2012 Liu, Frigaard, Vogl, Iino, Ohkuma, Overmann and Bryant. http://www.frontiersin.org/licenseagreement This is an open-access article distributed under the terms of the Creative Commons Attribution Non Commercial License, which permits non-commercial use, distribution, and reproduction in other forums, provided the original authors and source are credited. |
spellingShingle | Microbiology Liu, Zhenfeng Frigaard, Niels-Ulrik Vogl, Kajetan Iino, Takao Ohkuma, Moriya Overmann, Jörg Bryant, Donald A. Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi |
title | Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi |
title_full | Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi |
title_fullStr | Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi |
title_full_unstemmed | Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi |
title_short | Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi |
title_sort | complete genome of ignavibacterium album, a metabolically versatile, flagellated, facultative anaerobe from the phylum chlorobi |
topic | Microbiology |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362086/ https://www.ncbi.nlm.nih.gov/pubmed/22661972 http://dx.doi.org/10.3389/fmicb.2012.00185 |
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