Cargando…

Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi

Prior to the recent discovery of Ignavibacterium album (I. album), anaerobic photoautotrophic green sulfur bacteria (GSB) were the only members of the bacterial phylum Chlorobi that had been grown axenically. In contrast to GSB, sequence analysis of the 3.7-Mbp genome of I. album shows that this rec...

Descripción completa

Detalles Bibliográficos
Autores principales: Liu, Zhenfeng, Frigaard, Niels-Ulrik, Vogl, Kajetan, Iino, Takao, Ohkuma, Moriya, Overmann, Jörg, Bryant, Donald A.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Frontiers Research Foundation 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362086/
https://www.ncbi.nlm.nih.gov/pubmed/22661972
http://dx.doi.org/10.3389/fmicb.2012.00185
_version_ 1782234196062765056
author Liu, Zhenfeng
Frigaard, Niels-Ulrik
Vogl, Kajetan
Iino, Takao
Ohkuma, Moriya
Overmann, Jörg
Bryant, Donald A.
author_facet Liu, Zhenfeng
Frigaard, Niels-Ulrik
Vogl, Kajetan
Iino, Takao
Ohkuma, Moriya
Overmann, Jörg
Bryant, Donald A.
author_sort Liu, Zhenfeng
collection PubMed
description Prior to the recent discovery of Ignavibacterium album (I. album), anaerobic photoautotrophic green sulfur bacteria (GSB) were the only members of the bacterial phylum Chlorobi that had been grown axenically. In contrast to GSB, sequence analysis of the 3.7-Mbp genome of I. album shows that this recently described member of the phylum Chlorobi is a chemoheterotroph with a versatile metabolism. I. album lacks genes for photosynthesis and sulfur oxidation but has a full set of genes for flagella and chemotaxis. The occurrence of genes for multiple electron transfer complexes suggests that I. album is capable of organoheterotrophy under both oxic and anoxic conditions. The occurrence of genes encoding enzymes for CO(2) fixation as well as other enzymes of the reductive TCA cycle suggests that mixotrophy may be possible under certain growth conditions. However, known biosynthetic pathways for several amino acids are incomplete; this suggests that I. album is dependent upon on exogenous sources of these metabolites or employs novel biosynthetic pathways. Comparisons of I. album and other members of the phylum Chlorobi suggest that the physiology of the ancestors of this phylum might have been quite different from that of modern GSB.
format Online
Article
Text
id pubmed-3362086
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Frontiers Research Foundation
record_format MEDLINE/PubMed
spelling pubmed-33620862012-06-01 Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi Liu, Zhenfeng Frigaard, Niels-Ulrik Vogl, Kajetan Iino, Takao Ohkuma, Moriya Overmann, Jörg Bryant, Donald A. Front Microbiol Microbiology Prior to the recent discovery of Ignavibacterium album (I. album), anaerobic photoautotrophic green sulfur bacteria (GSB) were the only members of the bacterial phylum Chlorobi that had been grown axenically. In contrast to GSB, sequence analysis of the 3.7-Mbp genome of I. album shows that this recently described member of the phylum Chlorobi is a chemoheterotroph with a versatile metabolism. I. album lacks genes for photosynthesis and sulfur oxidation but has a full set of genes for flagella and chemotaxis. The occurrence of genes for multiple electron transfer complexes suggests that I. album is capable of organoheterotrophy under both oxic and anoxic conditions. The occurrence of genes encoding enzymes for CO(2) fixation as well as other enzymes of the reductive TCA cycle suggests that mixotrophy may be possible under certain growth conditions. However, known biosynthetic pathways for several amino acids are incomplete; this suggests that I. album is dependent upon on exogenous sources of these metabolites or employs novel biosynthetic pathways. Comparisons of I. album and other members of the phylum Chlorobi suggest that the physiology of the ancestors of this phylum might have been quite different from that of modern GSB. Frontiers Research Foundation 2012-05-29 /pmc/articles/PMC3362086/ /pubmed/22661972 http://dx.doi.org/10.3389/fmicb.2012.00185 Text en Copyright © 2012 Liu, Frigaard, Vogl, Iino, Ohkuma, Overmann and Bryant. http://www.frontiersin.org/licenseagreement This is an open-access article distributed under the terms of the Creative Commons Attribution Non Commercial License, which permits non-commercial use, distribution, and reproduction in other forums, provided the original authors and source are credited.
spellingShingle Microbiology
Liu, Zhenfeng
Frigaard, Niels-Ulrik
Vogl, Kajetan
Iino, Takao
Ohkuma, Moriya
Overmann, Jörg
Bryant, Donald A.
Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi
title Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi
title_full Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi
title_fullStr Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi
title_full_unstemmed Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi
title_short Complete Genome of Ignavibacterium album, a Metabolically Versatile, Flagellated, Facultative Anaerobe from the Phylum Chlorobi
title_sort complete genome of ignavibacterium album, a metabolically versatile, flagellated, facultative anaerobe from the phylum chlorobi
topic Microbiology
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362086/
https://www.ncbi.nlm.nih.gov/pubmed/22661972
http://dx.doi.org/10.3389/fmicb.2012.00185
work_keys_str_mv AT liuzhenfeng completegenomeofignavibacteriumalbumametabolicallyversatileflagellatedfacultativeanaerobefromthephylumchlorobi
AT frigaardnielsulrik completegenomeofignavibacteriumalbumametabolicallyversatileflagellatedfacultativeanaerobefromthephylumchlorobi
AT voglkajetan completegenomeofignavibacteriumalbumametabolicallyversatileflagellatedfacultativeanaerobefromthephylumchlorobi
AT iinotakao completegenomeofignavibacteriumalbumametabolicallyversatileflagellatedfacultativeanaerobefromthephylumchlorobi
AT ohkumamoriya completegenomeofignavibacteriumalbumametabolicallyversatileflagellatedfacultativeanaerobefromthephylumchlorobi
AT overmannjorg completegenomeofignavibacteriumalbumametabolicallyversatileflagellatedfacultativeanaerobefromthephylumchlorobi
AT bryantdonalda completegenomeofignavibacteriumalbumametabolicallyversatileflagellatedfacultativeanaerobefromthephylumchlorobi