Cargando…

Deciphering the Sox-Oct partner code by quantitative cooperativity measurements

Several Sox-Oct transcription factor (TF) combinations have been shown to cooperate on diverse enhancers to determine cell fates. Here, we developed a method to quantify biochemically the Sox-Oct cooperation and assessed the pairing of the high-mobility group (HMG) domains of 11 Sox TFs with Oct4 on...

Descripción completa

Detalles Bibliográficos
Autores principales:	Ng, Calista K. L., Li, Noel X., Chee, Sheena, Prabhakar, Shyam, Kolatkar, Prasanna R., Jauch, Ralf
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2012
Materias:	Molecular Biology
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3367189/ https://www.ncbi.nlm.nih.gov/pubmed/22344693 http://dx.doi.org/10.1093/nar/gks153

Ejemplares similares

DNA-mediated cooperativity facilitates the co-selection of cryptic enhancer sequences by SOX2 and PAX6 transcription factors
por: Narasimhan, Kamesh, et al.
Publicado: (2015)

TherMos: Estimating protein–DNA binding energies from in vivo binding profiles
por: Sun, Wenjie, et al.
Publicado: (2013)

Structural basis for the cooperative DNA recognition by Smad4 MH1 dimers
por: Baburajendran, Nithya, et al.
Publicado: (2011)

Structure of Smad1 MH1/DNA complex reveals distinctive rearrangements of BMP and TGF-β effectors
por: BabuRajendran, Nithya, et al.
Publicado: (2010)

Structure and decoy-mediated inhibition of the SOX18/Prox1-DNA interaction
por: Klaus, Miriam, et al.
Publicado: (2016)

Elevating the levels of Sox2 in embryonal carcinoma cells and embryonic stem cells inhibits the expression of Sox2:Oct-3/4 target genes(†)
por: Boer, Brian, et al.
Publicado: (2007)

Dissecting the role of distinct OCT4-SOX2 heterodimer configurations in pluripotency
por: Tapia, Natalia, et al.
Publicado: (2015)

Quantitative profiling of selective Sox/POU pairing on hundreds of sequences in parallel by Coop-seq
por: Chang, Yiming K., et al.
Publicado: (2017)

SOXE transcription factors form selective dimers on non-compact DNA motifs through multifaceted interactions between dimerization and high-mobility group domains
por: Huang, Yong-Heng, et al.
Publicado: (2015)

OCT4: A penetrant pluripotency inducer
por: Wang, Xuecong, et al.
Publicado: (2014)

The SOXE transcription factors—SOX8, SOX9 and SOX10—share a bi-partite transactivation mechanism
por: Haseeb, Abdul, et al.
Publicado: (2019)

The three SoxC proteins—Sox4, Sox11 and Sox12—exhibit overlapping expression patterns and molecular properties
por: Dy, Peter, et al.
Publicado: (2008)

ompW is cooperatively upregulated by MarA and SoxS in response to menadione
por: Collao, B., et al.
Publicado: (2013)

Changing POU dimerization preferences converts Oct6 into a pluripotency inducer
por: Jerabek, Stepan, et al.
Publicado: (2016)

An Integrative Developmental Genomics and Systems Biology Approach to Identify an In Vivo Sox Trio-Mediated Gene Regulatory Network in Murine Embryos
por: Lee, Wenqing Jean, et al.
Publicado: (2017)

Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2
por: Malik, Vikas, et al.
Publicado: (2019)

Methylation of the Sox9 and Oct4 promoters and its correlation with gene expression during testicular development in the laboratory mouse
por: Pamnani, Mamta, et al.
Publicado: (2016)

SOX9 and SOX10 control fluid homeostasis in the inner ear for hearing through independent and cooperative mechanisms
por: Szeto, Irene Y. Y., et al.
Publicado: (2022)

Transcriptional regulation of chondrogenesis by coactivator Tip60 via chromatin association with Sox9 and Sox5
por: Hattori, Takako, et al.
Publicado: (2008)

Structural analysis and dimerization profile of the SCAN domain of the pluripotency factor Zfp206
por: Liang, Yu, et al.
Publicado: (2012)

Expression of SOX2 and OCT4 in odontogenic cysts and tumors
por: Phattarataratip, Ekarat, et al.
Publicado: (2021)

Sox7, Sox17, and Sox18 Cooperatively Regulate Vascular Development in the Mouse Retina
por: Zhou, Yulian, et al.
Publicado: (2015)

Elimination of SOX2/OCT4-Associated Prostate Cancer Stem Cells Blocks Tumor Development and Enhances Therapeutic Response
por: Vaddi, Prasanna Kumar, et al.
Publicado: (2019)

Transcriptional Regulation of Vih by Oct4 and Sox9 in Scylla paramamosain
por: Liao, Jiaqian, et al.
Publicado: (2020)

Exogenous OCT4 and SOX2 Contribution to In Vitro Reprogramming in Cattle
por: Machado, Lucas Simões, et al.
Publicado: (2023)

Flavin Adenine Dinucleotide (FAD) and Pyridoxal 5′-Phosphate (PLP) Bind to Sox9 and Alter the Expression of Key Pancreatic Progenitor Transcription Factors
por: Islam, Zeyaul, et al.
Publicado: (2022)

Two primate-specific small non-protein-coding RNAs in transgenic mice: neuronal expression, subcellular localization and binding partners
por: Khanam, Tasneem, et al.
Publicado: (2007)

S100A10 and its binding partners in depression and antidepressant actions
por: Chen, Michelle X., et al.
Publicado: (2022)

Comprehensive prediction in 78 human cell lines reveals rigidity and compactness of transcription factor dimers
por: Jankowski, Aleksander, et al.
Publicado: (2013)

Mathematics's role in the grand challenge of deciphering the molecular basis of life
por: Koehl, Patrice
Publicado: (2014)

SOXE neofunctionalization and elaboration of the neural crest during chordate evolution
por: Tai, Andrew, et al.
Publicado: (2016)

Deciphering the SUMO code in the kidney
por: Yang, Zhen, et al.
Publicado: (2018)

Specificity and application of SOX2 antibody
por: Wei, Longqin, et al.
Publicado: (2020)

Exploring the utility of organo-polyoxometalate hybrids to inhibit SOX transcription factors
por: Narasimhan, Kamesh, et al.
Publicado: (2014)

SOX9 is targeted for proteasomal degradation by the E3 ligase FBW7 in response to DNA damage
por: Hong, Xuehui, et al.
Publicado: (2016)

Targeted silencing of the oncogenic transcription factor SOX2 in breast cancer
por: Stolzenburg, Sabine, et al.
Publicado: (2012)

Homodimerization regulates an endothelial specific signature of the SOX18 transcription factor
por: Moustaqil, Mehdi, et al.
Publicado: (2018)

Clinical significance of OCT4 and SOX2 protein expression in cervical cancer
por: Kim, Bo Wook, et al.
Publicado: (2015)

Immunoexpression of stem cell markers SOX-2, NANOG AND OCT4 in ameloblastoma
por: Martins Balbinot, Karolyny, et al.
Publicado: (2023)

Commentary: Deciphering the code of machine learning – An ophthalmologist’s step by step guide to posterity
por: Ramesh, Prasanna Venkatesh, et al.
Publicado: (2023)

Cannot write session to /tmp/vufind_sessions/sess_j9rg4m59j3ombpmjh77u9s2dgv