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Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium

Saprospira grandis is a coastal marine bacterium that can capture and prey upon other marine bacteria using a mechanism known as ‘ixotrophy’. Here, we present the complete genome sequence of Saprospira grandis str. Lewin isolated from La Jolla beach in San Diego, California. The complete genome sequ...

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Autores principales: Saw, Jimmy H. W., Yuryev, Anton, Kanbe, Masaomi, Hou, Shaobin, Young, Aaron G., Aizawa, Shin-Ichi, Alam, Maqsudul
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368406/
https://www.ncbi.nlm.nih.gov/pubmed/22675601
http://dx.doi.org/10.4056/sigs.2445005
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author Saw, Jimmy H. W.
Yuryev, Anton
Kanbe, Masaomi
Hou, Shaobin
Young, Aaron G.
Aizawa, Shin-Ichi
Alam, Maqsudul
author_facet Saw, Jimmy H. W.
Yuryev, Anton
Kanbe, Masaomi
Hou, Shaobin
Young, Aaron G.
Aizawa, Shin-Ichi
Alam, Maqsudul
author_sort Saw, Jimmy H. W.
collection PubMed
description Saprospira grandis is a coastal marine bacterium that can capture and prey upon other marine bacteria using a mechanism known as ‘ixotrophy’. Here, we present the complete genome sequence of Saprospira grandis str. Lewin isolated from La Jolla beach in San Diego, California. The complete genome sequence comprises a chromosome of 4.35 Mbp and a plasmid of 54.9 Kbp. Genome analysis revealed incomplete pathways for the biosynthesis of nine essential amino acids but presence of a large number of peptidases. The genome encodes multiple copies of sensor globin-coupled rsbR genes thought to be essential for stress response and the presence of such sensor globins in Bacteroidetes is unprecedented. A total of 429 spacer sequences within the three CRISPR repeat regions were identified in the genome and this number is the largest among all the Bacteroidetes sequenced to date.
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spelling pubmed-33684062012-06-06 Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium Saw, Jimmy H. W. Yuryev, Anton Kanbe, Masaomi Hou, Shaobin Young, Aaron G. Aizawa, Shin-Ichi Alam, Maqsudul Stand Genomic Sci Short Genome Reports Saprospira grandis is a coastal marine bacterium that can capture and prey upon other marine bacteria using a mechanism known as ‘ixotrophy’. Here, we present the complete genome sequence of Saprospira grandis str. Lewin isolated from La Jolla beach in San Diego, California. The complete genome sequence comprises a chromosome of 4.35 Mbp and a plasmid of 54.9 Kbp. Genome analysis revealed incomplete pathways for the biosynthesis of nine essential amino acids but presence of a large number of peptidases. The genome encodes multiple copies of sensor globin-coupled rsbR genes thought to be essential for stress response and the presence of such sensor globins in Bacteroidetes is unprecedented. A total of 429 spacer sequences within the three CRISPR repeat regions were identified in the genome and this number is the largest among all the Bacteroidetes sequenced to date. Michigan State University 2012-03-05 /pmc/articles/PMC3368406/ /pubmed/22675601 http://dx.doi.org/10.4056/sigs.2445005 Text en
spellingShingle Short Genome Reports
Saw, Jimmy H. W.
Yuryev, Anton
Kanbe, Masaomi
Hou, Shaobin
Young, Aaron G.
Aizawa, Shin-Ichi
Alam, Maqsudul
Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium
title Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium
title_full Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium
title_fullStr Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium
title_full_unstemmed Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium
title_short Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium
title_sort complete genome sequencing and analysis of saprospira grandis str. lewin, a predatory marine bacterium
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368406/
https://www.ncbi.nlm.nih.gov/pubmed/22675601
http://dx.doi.org/10.4056/sigs.2445005
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