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Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium
Saprospira grandis is a coastal marine bacterium that can capture and prey upon other marine bacteria using a mechanism known as ‘ixotrophy’. Here, we present the complete genome sequence of Saprospira grandis str. Lewin isolated from La Jolla beach in San Diego, California. The complete genome sequ...
Autores principales: | , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368406/ https://www.ncbi.nlm.nih.gov/pubmed/22675601 http://dx.doi.org/10.4056/sigs.2445005 |
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author | Saw, Jimmy H. W. Yuryev, Anton Kanbe, Masaomi Hou, Shaobin Young, Aaron G. Aizawa, Shin-Ichi Alam, Maqsudul |
author_facet | Saw, Jimmy H. W. Yuryev, Anton Kanbe, Masaomi Hou, Shaobin Young, Aaron G. Aizawa, Shin-Ichi Alam, Maqsudul |
author_sort | Saw, Jimmy H. W. |
collection | PubMed |
description | Saprospira grandis is a coastal marine bacterium that can capture and prey upon other marine bacteria using a mechanism known as ‘ixotrophy’. Here, we present the complete genome sequence of Saprospira grandis str. Lewin isolated from La Jolla beach in San Diego, California. The complete genome sequence comprises a chromosome of 4.35 Mbp and a plasmid of 54.9 Kbp. Genome analysis revealed incomplete pathways for the biosynthesis of nine essential amino acids but presence of a large number of peptidases. The genome encodes multiple copies of sensor globin-coupled rsbR genes thought to be essential for stress response and the presence of such sensor globins in Bacteroidetes is unprecedented. A total of 429 spacer sequences within the three CRISPR repeat regions were identified in the genome and this number is the largest among all the Bacteroidetes sequenced to date. |
format | Online Article Text |
id | pubmed-3368406 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-33684062012-06-06 Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium Saw, Jimmy H. W. Yuryev, Anton Kanbe, Masaomi Hou, Shaobin Young, Aaron G. Aizawa, Shin-Ichi Alam, Maqsudul Stand Genomic Sci Short Genome Reports Saprospira grandis is a coastal marine bacterium that can capture and prey upon other marine bacteria using a mechanism known as ‘ixotrophy’. Here, we present the complete genome sequence of Saprospira grandis str. Lewin isolated from La Jolla beach in San Diego, California. The complete genome sequence comprises a chromosome of 4.35 Mbp and a plasmid of 54.9 Kbp. Genome analysis revealed incomplete pathways for the biosynthesis of nine essential amino acids but presence of a large number of peptidases. The genome encodes multiple copies of sensor globin-coupled rsbR genes thought to be essential for stress response and the presence of such sensor globins in Bacteroidetes is unprecedented. A total of 429 spacer sequences within the three CRISPR repeat regions were identified in the genome and this number is the largest among all the Bacteroidetes sequenced to date. Michigan State University 2012-03-05 /pmc/articles/PMC3368406/ /pubmed/22675601 http://dx.doi.org/10.4056/sigs.2445005 Text en |
spellingShingle | Short Genome Reports Saw, Jimmy H. W. Yuryev, Anton Kanbe, Masaomi Hou, Shaobin Young, Aaron G. Aizawa, Shin-Ichi Alam, Maqsudul Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium |
title | Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium |
title_full | Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium |
title_fullStr | Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium |
title_full_unstemmed | Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium |
title_short | Complete genome sequencing and analysis of Saprospira grandis str. Lewin, a predatory marine bacterium |
title_sort | complete genome sequencing and analysis of saprospira grandis str. lewin, a predatory marine bacterium |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368406/ https://www.ncbi.nlm.nih.gov/pubmed/22675601 http://dx.doi.org/10.4056/sigs.2445005 |
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