Cargando…
Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria
Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of...
| Autores principales: | , , , , , , , , , , , , , , , , , , , , , , |
|---|---|
| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Michigan State University
2011
|
| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368413/ https://www.ncbi.nlm.nih.gov/pubmed/22675578 http://dx.doi.org/10.4056/sigs.1854551 |
| _version_ | 1782234953686188032 |
|---|---|
| author | Grote, Jana Bayindirli, Cansu Bergauer, Kristin Carpintero de Moraes, Paula Chen, Huan D’Ambrosio, Lindsay Edwards, Bethanie Fernández-Gómez, Beatriz Hamisi, Mariam Logares, Ramiro Nguyen, Dan Rii, Yoshimi M. Saeck, Emily Schutte, Charles Widner, Brittany Church, Matthew J. Steward, Grieg F. Karl, David M. DeLong, Edward F. Eppley, John M. Schuster, Stephan C. Kyrpides, Nikos C. Rappé, Michael S. |
| author_facet | Grote, Jana Bayindirli, Cansu Bergauer, Kristin Carpintero de Moraes, Paula Chen, Huan D’Ambrosio, Lindsay Edwards, Bethanie Fernández-Gómez, Beatriz Hamisi, Mariam Logares, Ramiro Nguyen, Dan Rii, Yoshimi M. Saeck, Emily Schutte, Charles Widner, Brittany Church, Matthew J. Steward, Grieg F. Karl, David M. DeLong, Edward F. Eppley, John M. Schuster, Stephan C. Kyrpides, Nikos C. Rappé, Michael S. |
| author_sort | Grote, Jana |
| collection | PubMed |
| description | Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes. |
| format | Online Article Text |
| id | pubmed-3368413 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2011 |
| publisher | Michigan State University |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-33684132012-06-06 Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria Grote, Jana Bayindirli, Cansu Bergauer, Kristin Carpintero de Moraes, Paula Chen, Huan D’Ambrosio, Lindsay Edwards, Bethanie Fernández-Gómez, Beatriz Hamisi, Mariam Logares, Ramiro Nguyen, Dan Rii, Yoshimi M. Saeck, Emily Schutte, Charles Widner, Brittany Church, Matthew J. Steward, Grieg F. Karl, David M. DeLong, Edward F. Eppley, John M. Schuster, Stephan C. Kyrpides, Nikos C. Rappé, Michael S. Stand Genomic Sci Short Genome Reports Strain HIMB100 is a planktonic marine bacterium in the class Alphaproteobacteria. This strain is of interest because it is one of the first known isolates from a globally ubiquitous clade of marine bacteria known as SAR116 within the family Rhodospirillaceae. Here we describe preliminary features of the organism, together with the draft genome sequence and annotation. This is the second genome sequence of a member of the SAR116 clade. The 2,458,945 bp genome contains 2,334 protein-coding and 42 RNA genes. Michigan State University 2011-12-23 /pmc/articles/PMC3368413/ /pubmed/22675578 http://dx.doi.org/10.4056/sigs.1854551 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
| spellingShingle | Short Genome Reports Grote, Jana Bayindirli, Cansu Bergauer, Kristin Carpintero de Moraes, Paula Chen, Huan D’Ambrosio, Lindsay Edwards, Bethanie Fernández-Gómez, Beatriz Hamisi, Mariam Logares, Ramiro Nguyen, Dan Rii, Yoshimi M. Saeck, Emily Schutte, Charles Widner, Brittany Church, Matthew J. Steward, Grieg F. Karl, David M. DeLong, Edward F. Eppley, John M. Schuster, Stephan C. Kyrpides, Nikos C. Rappé, Michael S. Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria |
| title | Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria |
| title_full | Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria |
| title_fullStr | Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria |
| title_full_unstemmed | Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria |
| title_short | Draft genome sequence of strain HIMB100, a cultured representative of the SAR116 clade of marine Alphaproteobacteria |
| title_sort | draft genome sequence of strain himb100, a cultured representative of the sar116 clade of marine alphaproteobacteria |
| topic | Short Genome Reports |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368413/ https://www.ncbi.nlm.nih.gov/pubmed/22675578 http://dx.doi.org/10.4056/sigs.1854551 |
| work_keys_str_mv | AT grotejana draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT bayindirlicansu draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT bergauerkristin draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT carpinterodemoraespaula draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT chenhuan draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT dambrosiolindsay draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT edwardsbethanie draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT fernandezgomezbeatriz draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT hamisimariam draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT logaresramiro draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT nguyendan draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT riiyoshimim draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT saeckemily draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT schuttecharles draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT widnerbrittany draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT churchmatthewj draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT stewardgriegf draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT karldavidm draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT delongedwardf draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT eppleyjohnm draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT schusterstephanc draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT kyrpidesnikosc draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria AT rappemichaels draftgenomesequenceofstrainhimb100aculturedrepresentativeofthesar116cladeofmarinealphaproteobacteria |