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Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))

Thiothrix nivea (Rabenhorst 1865) Winogradsky 1888 (Approved Lists 1980) emend. Larkin and Shinabarger 1983 is the type species of the genus Thiothrix in the family Thiotrichaceae. The species is of interest not only because of its isolated location in the yet to be genomically characterized region...

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Autores principales: Lapidus, Alla, Nolan, Matt, Lucas, Susan, Glavina Del Rio, Tijana, Tice, Hope, Cheng, Jan-Fang, Tapia, Roxanne, Han, Cliff, Goodwin, Lynne, Pitluck, Sam, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Huntemann, Marcel, Mavromatis, Konstantinos, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Brambilla, Evelyne-Marie, Rohde, Manfred, Abt, Birte, Verbarg, Susanne, Göker, Markus, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, Woyke, Tanja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368414/
https://www.ncbi.nlm.nih.gov/pubmed/22675589
http://dx.doi.org/10.4056/sigs.2344929
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author Lapidus, Alla
Nolan, Matt
Lucas, Susan
Glavina Del Rio, Tijana
Tice, Hope
Cheng, Jan-Fang
Tapia, Roxanne
Han, Cliff
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Huntemann, Marcel
Mavromatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Abt, Birte
Verbarg, Susanne
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Woyke, Tanja
author_facet Lapidus, Alla
Nolan, Matt
Lucas, Susan
Glavina Del Rio, Tijana
Tice, Hope
Cheng, Jan-Fang
Tapia, Roxanne
Han, Cliff
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Huntemann, Marcel
Mavromatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Abt, Birte
Verbarg, Susanne
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Woyke, Tanja
author_sort Lapidus, Alla
collection PubMed
description Thiothrix nivea (Rabenhorst 1865) Winogradsky 1888 (Approved Lists 1980) emend. Larkin and Shinabarger 1983 is the type species of the genus Thiothrix in the family Thiotrichaceae. The species is of interest not only because of its isolated location in the yet to be genomically characterized region of the tree of life, but also because of its life-style with gliding gonidia, the multilayer sheath, rosettes, and the embedded sulfur granules. Strain JP2(T) is the neotype strain of the species which was first observed by Rabenhorst in 1865 and later reclassified by Winogradsky in 1888 into the then novel genus Thiothrix. This is the first completed (improved-high-quality-draft) genome sequence to be published of a member of the family Thiotrichaceae. The genome in its current assembly consists of 15 contigs in four scaffolds with a total of 4,691,711 bp bearing 4,542 protein-coding and 52 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-33684142012-06-06 Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)) Lapidus, Alla Nolan, Matt Lucas, Susan Glavina Del Rio, Tijana Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Huntemann, Marcel Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Abt, Birte Verbarg, Susanne Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja Stand Genomic Sci Short Genome Reports Thiothrix nivea (Rabenhorst 1865) Winogradsky 1888 (Approved Lists 1980) emend. Larkin and Shinabarger 1983 is the type species of the genus Thiothrix in the family Thiotrichaceae. The species is of interest not only because of its isolated location in the yet to be genomically characterized region of the tree of life, but also because of its life-style with gliding gonidia, the multilayer sheath, rosettes, and the embedded sulfur granules. Strain JP2(T) is the neotype strain of the species which was first observed by Rabenhorst in 1865 and later reclassified by Winogradsky in 1888 into the then novel genus Thiothrix. This is the first completed (improved-high-quality-draft) genome sequence to be published of a member of the family Thiotrichaceae. The genome in its current assembly consists of 15 contigs in four scaffolds with a total of 4,691,711 bp bearing 4,542 protein-coding and 52 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2011-12-30 /pmc/articles/PMC3368414/ /pubmed/22675589 http://dx.doi.org/10.4056/sigs.2344929 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Short Genome Reports
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Glavina Del Rio, Tijana
Tice, Hope
Cheng, Jan-Fang
Tapia, Roxanne
Han, Cliff
Goodwin, Lynne
Pitluck, Sam
Liolios, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Huntemann, Marcel
Mavromatis, Konstantinos
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Abt, Birte
Verbarg, Susanne
Göker, Markus
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Woyke, Tanja
Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))
title Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))
title_full Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))
title_fullStr Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))
title_full_unstemmed Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))
title_short Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))
title_sort genome sequence of the filamentous, gliding thiothrix nivea neotype strain (jp2(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368414/
https://www.ncbi.nlm.nih.gov/pubmed/22675589
http://dx.doi.org/10.4056/sigs.2344929
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