Cargando…
Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T))
Thiothrix nivea (Rabenhorst 1865) Winogradsky 1888 (Approved Lists 1980) emend. Larkin and Shinabarger 1983 is the type species of the genus Thiothrix in the family Thiotrichaceae. The species is of interest not only because of its isolated location in the yet to be genomically characterized region...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2011
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368414/ https://www.ncbi.nlm.nih.gov/pubmed/22675589 http://dx.doi.org/10.4056/sigs.2344929 |
_version_ | 1782234953907437568 |
---|---|
author | Lapidus, Alla Nolan, Matt Lucas, Susan Glavina Del Rio, Tijana Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Huntemann, Marcel Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Abt, Birte Verbarg, Susanne Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja |
author_facet | Lapidus, Alla Nolan, Matt Lucas, Susan Glavina Del Rio, Tijana Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Huntemann, Marcel Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Abt, Birte Verbarg, Susanne Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja |
author_sort | Lapidus, Alla |
collection | PubMed |
description | Thiothrix nivea (Rabenhorst 1865) Winogradsky 1888 (Approved Lists 1980) emend. Larkin and Shinabarger 1983 is the type species of the genus Thiothrix in the family Thiotrichaceae. The species is of interest not only because of its isolated location in the yet to be genomically characterized region of the tree of life, but also because of its life-style with gliding gonidia, the multilayer sheath, rosettes, and the embedded sulfur granules. Strain JP2(T) is the neotype strain of the species which was first observed by Rabenhorst in 1865 and later reclassified by Winogradsky in 1888 into the then novel genus Thiothrix. This is the first completed (improved-high-quality-draft) genome sequence to be published of a member of the family Thiotrichaceae. The genome in its current assembly consists of 15 contigs in four scaffolds with a total of 4,691,711 bp bearing 4,542 protein-coding and 52 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Online Article Text |
id | pubmed-3368414 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-33684142012-06-06 Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)) Lapidus, Alla Nolan, Matt Lucas, Susan Glavina Del Rio, Tijana Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Huntemann, Marcel Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Abt, Birte Verbarg, Susanne Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja Stand Genomic Sci Short Genome Reports Thiothrix nivea (Rabenhorst 1865) Winogradsky 1888 (Approved Lists 1980) emend. Larkin and Shinabarger 1983 is the type species of the genus Thiothrix in the family Thiotrichaceae. The species is of interest not only because of its isolated location in the yet to be genomically characterized region of the tree of life, but also because of its life-style with gliding gonidia, the multilayer sheath, rosettes, and the embedded sulfur granules. Strain JP2(T) is the neotype strain of the species which was first observed by Rabenhorst in 1865 and later reclassified by Winogradsky in 1888 into the then novel genus Thiothrix. This is the first completed (improved-high-quality-draft) genome sequence to be published of a member of the family Thiotrichaceae. The genome in its current assembly consists of 15 contigs in four scaffolds with a total of 4,691,711 bp bearing 4,542 protein-coding and 52 RNA genes and is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2011-12-30 /pmc/articles/PMC3368414/ /pubmed/22675589 http://dx.doi.org/10.4056/sigs.2344929 Text en http://creativecommons.org/licenses/by/2.5/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Short Genome Reports Lapidus, Alla Nolan, Matt Lucas, Susan Glavina Del Rio, Tijana Tice, Hope Cheng, Jan-Fang Tapia, Roxanne Han, Cliff Goodwin, Lynne Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Huntemann, Marcel Mavromatis, Konstantinos Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Abt, Birte Verbarg, Susanne Göker, Markus Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)) |
title | Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)) |
title_full | Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)) |
title_fullStr | Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)) |
title_full_unstemmed | Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)) |
title_short | Genome sequence of the filamentous, gliding Thiothrix nivea neotype strain (JP2(T)) |
title_sort | genome sequence of the filamentous, gliding thiothrix nivea neotype strain (jp2(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3368414/ https://www.ncbi.nlm.nih.gov/pubmed/22675589 http://dx.doi.org/10.4056/sigs.2344929 |
work_keys_str_mv | AT lapidusalla genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT nolanmatt genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT lucassusan genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT glavinadelriotijana genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT ticehope genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT chengjanfang genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT tapiaroxanne genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT hancliff genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT goodwinlynne genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT pitlucksam genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT liolioskonstantinos genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT paganiioanna genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT ivanovanatalia genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT huntemannmarcel genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT mavromatiskonstantinos genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT mikhailovanatalia genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT patiamrita genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT chenamy genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT palaniappankrishna genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT landmiriam genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT brambillaevelynemarie genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT rohdemanfred genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT abtbirte genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT verbargsusanne genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT gokermarkus genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT bristowjames genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT eisenjonathana genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT markowitzvictor genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT hugenholtzphilip genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT kyrpidesnikosc genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT klenkhanspeter genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t AT woyketanja genomesequenceofthefilamentousglidingthiothrixniveaneotypestrainjp2t |