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Algorithm validation using multicolor phantoms
We present a framework for hyperspectral image (HSI) analysis validation, specifically abundance fraction estimation based on HSI measurements of water soluble dye mixtures printed on microarray chips. In our work we focus on the performance of two algorithms, the Least Absolute Shrinkage and Select...
Autores principales: | , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Optical Society of America
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370971/ https://www.ncbi.nlm.nih.gov/pubmed/22741077 http://dx.doi.org/10.1364/BOE.3.001300 |
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author | Samarov, Daniel V. Clarke, Matthew L. Lee, Ji Youn Allen, David W. Litorja, Maritoni Hwang, Jeeseong |
author_facet | Samarov, Daniel V. Clarke, Matthew L. Lee, Ji Youn Allen, David W. Litorja, Maritoni Hwang, Jeeseong |
author_sort | Samarov, Daniel V. |
collection | PubMed |
description | We present a framework for hyperspectral image (HSI) analysis validation, specifically abundance fraction estimation based on HSI measurements of water soluble dye mixtures printed on microarray chips. In our work we focus on the performance of two algorithms, the Least Absolute Shrinkage and Selection Operator (LASSO) and the Spatial LASSO (SPLASSO). The LASSO is a well known statistical method for simultaneously performing model estimation and variable selection. In the context of estimating abundance fractions in a HSI scene, the “sparse” representations provided by the LASSO are appropriate as not every pixel will be expected to contain every endmember. The SPLASSO is a novel approach we introduce here for HSI analysis which takes the framework of the LASSO algorithm a step further and incorporates the rich spatial information which is available in HSI to further improve the estimates of abundance. In our work here we introduce the dye mixture platform as a new benchmark data set for hyperspectral biomedical image processing and show our algorithm’s improvement over the standard LASSO. |
format | Online Article Text |
id | pubmed-3370971 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Optical Society of America |
record_format | MEDLINE/PubMed |
spelling | pubmed-33709712012-06-27 Algorithm validation using multicolor phantoms Samarov, Daniel V. Clarke, Matthew L. Lee, Ji Youn Allen, David W. Litorja, Maritoni Hwang, Jeeseong Biomed Opt Express Calibration, Validation and Phantom Studies We present a framework for hyperspectral image (HSI) analysis validation, specifically abundance fraction estimation based on HSI measurements of water soluble dye mixtures printed on microarray chips. In our work we focus on the performance of two algorithms, the Least Absolute Shrinkage and Selection Operator (LASSO) and the Spatial LASSO (SPLASSO). The LASSO is a well known statistical method for simultaneously performing model estimation and variable selection. In the context of estimating abundance fractions in a HSI scene, the “sparse” representations provided by the LASSO are appropriate as not every pixel will be expected to contain every endmember. The SPLASSO is a novel approach we introduce here for HSI analysis which takes the framework of the LASSO algorithm a step further and incorporates the rich spatial information which is available in HSI to further improve the estimates of abundance. In our work here we introduce the dye mixture platform as a new benchmark data set for hyperspectral biomedical image processing and show our algorithm’s improvement over the standard LASSO. Optical Society of America 2012-05-09 /pmc/articles/PMC3370971/ /pubmed/22741077 http://dx.doi.org/10.1364/BOE.3.001300 Text en © 2012 Optical Society of America http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License, which permits download and redistribution, provided that the original work is properly cited. This license restricts the article from being modified or used commercially. |
spellingShingle | Calibration, Validation and Phantom Studies Samarov, Daniel V. Clarke, Matthew L. Lee, Ji Youn Allen, David W. Litorja, Maritoni Hwang, Jeeseong Algorithm validation using multicolor phantoms |
title | Algorithm validation using multicolor phantoms |
title_full | Algorithm validation using multicolor phantoms |
title_fullStr | Algorithm validation using multicolor phantoms |
title_full_unstemmed | Algorithm validation using multicolor phantoms |
title_short | Algorithm validation using multicolor phantoms |
title_sort | algorithm validation using multicolor phantoms |
topic | Calibration, Validation and Phantom Studies |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370971/ https://www.ncbi.nlm.nih.gov/pubmed/22741077 http://dx.doi.org/10.1364/BOE.3.001300 |
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