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Algorithm validation using multicolor phantoms

We present a framework for hyperspectral image (HSI) analysis validation, specifically abundance fraction estimation based on HSI measurements of water soluble dye mixtures printed on microarray chips. In our work we focus on the performance of two algorithms, the Least Absolute Shrinkage and Select...

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Detalles Bibliográficos
Autores principales: Samarov, Daniel V., Clarke, Matthew L., Lee, Ji Youn, Allen, David W., Litorja, Maritoni, Hwang, Jeeseong
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Optical Society of America 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370971/
https://www.ncbi.nlm.nih.gov/pubmed/22741077
http://dx.doi.org/10.1364/BOE.3.001300
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author Samarov, Daniel V.
Clarke, Matthew L.
Lee, Ji Youn
Allen, David W.
Litorja, Maritoni
Hwang, Jeeseong
author_facet Samarov, Daniel V.
Clarke, Matthew L.
Lee, Ji Youn
Allen, David W.
Litorja, Maritoni
Hwang, Jeeseong
author_sort Samarov, Daniel V.
collection PubMed
description We present a framework for hyperspectral image (HSI) analysis validation, specifically abundance fraction estimation based on HSI measurements of water soluble dye mixtures printed on microarray chips. In our work we focus on the performance of two algorithms, the Least Absolute Shrinkage and Selection Operator (LASSO) and the Spatial LASSO (SPLASSO). The LASSO is a well known statistical method for simultaneously performing model estimation and variable selection. In the context of estimating abundance fractions in a HSI scene, the “sparse” representations provided by the LASSO are appropriate as not every pixel will be expected to contain every endmember. The SPLASSO is a novel approach we introduce here for HSI analysis which takes the framework of the LASSO algorithm a step further and incorporates the rich spatial information which is available in HSI to further improve the estimates of abundance. In our work here we introduce the dye mixture platform as a new benchmark data set for hyperspectral biomedical image processing and show our algorithm’s improvement over the standard LASSO.
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spelling pubmed-33709712012-06-27 Algorithm validation using multicolor phantoms Samarov, Daniel V. Clarke, Matthew L. Lee, Ji Youn Allen, David W. Litorja, Maritoni Hwang, Jeeseong Biomed Opt Express Calibration, Validation and Phantom Studies We present a framework for hyperspectral image (HSI) analysis validation, specifically abundance fraction estimation based on HSI measurements of water soluble dye mixtures printed on microarray chips. In our work we focus on the performance of two algorithms, the Least Absolute Shrinkage and Selection Operator (LASSO) and the Spatial LASSO (SPLASSO). The LASSO is a well known statistical method for simultaneously performing model estimation and variable selection. In the context of estimating abundance fractions in a HSI scene, the “sparse” representations provided by the LASSO are appropriate as not every pixel will be expected to contain every endmember. The SPLASSO is a novel approach we introduce here for HSI analysis which takes the framework of the LASSO algorithm a step further and incorporates the rich spatial information which is available in HSI to further improve the estimates of abundance. In our work here we introduce the dye mixture platform as a new benchmark data set for hyperspectral biomedical image processing and show our algorithm’s improvement over the standard LASSO. Optical Society of America 2012-05-09 /pmc/articles/PMC3370971/ /pubmed/22741077 http://dx.doi.org/10.1364/BOE.3.001300 Text en © 2012 Optical Society of America http://creativecommons.org/licenses/by-nc-nd/3.0 This is an open-access article distributed under the terms of the Creative Commons Attribution-Noncommercial-No Derivative Works 3.0 Unported License, which permits download and redistribution, provided that the original work is properly cited. This license restricts the article from being modified or used commercially.
spellingShingle Calibration, Validation and Phantom Studies
Samarov, Daniel V.
Clarke, Matthew L.
Lee, Ji Youn
Allen, David W.
Litorja, Maritoni
Hwang, Jeeseong
Algorithm validation using multicolor phantoms
title Algorithm validation using multicolor phantoms
title_full Algorithm validation using multicolor phantoms
title_fullStr Algorithm validation using multicolor phantoms
title_full_unstemmed Algorithm validation using multicolor phantoms
title_short Algorithm validation using multicolor phantoms
title_sort algorithm validation using multicolor phantoms
topic Calibration, Validation and Phantom Studies
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3370971/
https://www.ncbi.nlm.nih.gov/pubmed/22741077
http://dx.doi.org/10.1364/BOE.3.001300
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