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Enhanced rigid-bond restraints
The rigid-bond model [Hirshfeld (1976 ▶). Acta Cryst. A32, 239–244] states that the mean-square displacements of two atoms are equal in the direction of the bond joining them. This criterion is widely used for verification (as intended by Hirshfeld) and also as a restraint in structure refinement as...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
International Union of Crystallography
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3377366/ http://dx.doi.org/10.1107/S0108767312014535 |
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author | Thorn, Andrea Dittrich, Birger Sheldrick, George M. |
author_facet | Thorn, Andrea Dittrich, Birger Sheldrick, George M. |
author_sort | Thorn, Andrea |
collection | PubMed |
description | The rigid-bond model [Hirshfeld (1976 ▶). Acta Cryst. A32, 239–244] states that the mean-square displacements of two atoms are equal in the direction of the bond joining them. This criterion is widely used for verification (as intended by Hirshfeld) and also as a restraint in structure refinement as suggested by Rollett [Crystallographic Computing (1970 ▶), edited by F. R. Ahmed et al., pp. 167–181. Copenhagen: Munksgaard]. By reformulating this condition, so that the relative motion of the two atoms is required to be perpendicular to the bond, the number of restraints that can be applied per anisotropic atom is increased from about one to about three. Application of this condition to 1,3-distances in addition to the 1,2-distances means that on average just over six restraints can be applied to the six anisotropic displacement parameters of each atom. This concept is tested against very high resolution data of a small peptide and employed as a restraint for protein refinement at more modest resolution (e.g. 1.7 Å). |
format | Online Article Text |
id | pubmed-3377366 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | International Union of Crystallography |
record_format | MEDLINE/PubMed |
spelling | pubmed-33773662012-06-20 Enhanced rigid-bond restraints Thorn, Andrea Dittrich, Birger Sheldrick, George M. Acta Crystallogr A Research Papers The rigid-bond model [Hirshfeld (1976 ▶). Acta Cryst. A32, 239–244] states that the mean-square displacements of two atoms are equal in the direction of the bond joining them. This criterion is widely used for verification (as intended by Hirshfeld) and also as a restraint in structure refinement as suggested by Rollett [Crystallographic Computing (1970 ▶), edited by F. R. Ahmed et al., pp. 167–181. Copenhagen: Munksgaard]. By reformulating this condition, so that the relative motion of the two atoms is required to be perpendicular to the bond, the number of restraints that can be applied per anisotropic atom is increased from about one to about three. Application of this condition to 1,3-distances in addition to the 1,2-distances means that on average just over six restraints can be applied to the six anisotropic displacement parameters of each atom. This concept is tested against very high resolution data of a small peptide and employed as a restraint for protein refinement at more modest resolution (e.g. 1.7 Å). International Union of Crystallography 2012-07-01 2012-05-01 /pmc/articles/PMC3377366/ http://dx.doi.org/10.1107/S0108767312014535 Text en © Andrea Thorn et al. 2012 http://creativecommons.org/licenses/by/2.0/uk/ This is an open-access article distributed under the terms of the Creative Commons Attribution Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited. |
spellingShingle | Research Papers Thorn, Andrea Dittrich, Birger Sheldrick, George M. Enhanced rigid-bond restraints |
title | Enhanced rigid-bond restraints |
title_full | Enhanced rigid-bond restraints |
title_fullStr | Enhanced rigid-bond restraints |
title_full_unstemmed | Enhanced rigid-bond restraints |
title_short | Enhanced rigid-bond restraints |
title_sort | enhanced rigid-bond restraints |
topic | Research Papers |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3377366/ http://dx.doi.org/10.1107/S0108767312014535 |
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