Cargando…

Identification of Mendelian inconsistencies between SNP and pedigree information of sibs

BACKGROUND: Using SNP genotypes to apply genomic selection in breeding programs is becoming common practice. Tools to edit and check the quality of genotype data are required. Checking for Mendelian inconsistencies makes it possible to identify animals for which pedigree information and genotype inf...

Descripción completa

Detalles Bibliográficos
Autores principales:	Calus, Mario PL, Mulder, Han A, Bastiaansen, John WM
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2011
Materias:	Research
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3377921/ https://www.ncbi.nlm.nih.gov/pubmed/21988752 http://dx.doi.org/10.1186/1297-9686-43-34

Ejemplares similares

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds
por: Zhang, Qianqian, et al.
Publicado: (2015)

Rules for resolving Mendelian inconsistencies in nuclear pedigrees typed for two-allele markers
por: Khan, Sajjad Ahmad, et al.
Publicado: (2017)

Selective genotyping strategies for a sib test scheme of a broiler breeder program
por: de Hollander, Charlie A., et al.
Publicado: (2023)

Sensitivity of methods for estimating breeding values using genetic markers to the number of QTL and distribution of QTL variance
por: Coster, Albart, et al.
Publicado: (2010)

Long-term response to genomic selection: effects of estimation method and reference population structure for different genetic architectures
por: Bastiaansen, John WM, et al.
Publicado: (2012)

Genomic prediction of breeding values using previously estimated SNP variances
por: Calus, Mario PL, et al.
Publicado: (2014)

VIPER: a visualisation tool for exploring inheritance inconsistencies in genotyped pedigrees
por: Paterson, Trevor, et al.
Publicado: (2012)

Efficient detection of QTL with large effects in a simulated pig-type pedigree using selective genotyping
por: Heuven, Henri CM, et al.
Publicado: (2009)

Inferring haplotypes and parental genotypes in larger full sib-ships and other pedigrees with missing or erroneous genotype data
por: Nettelblad, Carl
Publicado: (2012)

hsphase: an R package for pedigree reconstruction, detection of recombination events, phasing and imputation of half-sib family groups
por: Ferdosi, Mohammad H, et al.
Publicado: (2014)

Comparison on genomic prediction using pedigree BLUP and single step GBLUP through the Hanwoo full-sib family
por: Kim, Eun-Ho, et al.
Publicado: (2023)

Economic optimization of full-sib test group size and genotyping effort in a breeding program for Atlantic salmon
por: Janssen, Kasper, et al.
Publicado: (2019)

Estimating genomic breeding values from the QTL-MAS Workshop Data using a single SNP and haplotype/IBD approach
por: Calus, Mario PL, et al.
Publicado: (2009)

Simultaneous QTL detection and genomic breeding value estimation using high density SNP chips
por: Veerkamp, Roel F, et al.
Publicado: (2010)

Estimating genomic breeding values and detecting QTL using univariate and bivariate models
por: Calus, Mario PL, et al.
Publicado: (2011)

Prediction of haplotypes for ungenotyped animals and its effect on marker-assisted breeding value estimation
por: Mulder, Han A, et al.
Publicado: (2010)

Detection of recombination events, haplotype reconstruction and imputation of sires using half-sib SNP genotypes
por: Ferdosi, Mohammad H, et al.
Publicado: (2014)

Sib1, Sib2, and Sib3 proteins are required for ferrichrome-mediated cross-feeding interaction between Schizosaccharomyces pombe and Saccharomyces cerevisiae
por: Brault, Ariane, et al.
Publicado: (2022)

Mysterious SiB(3): Identifying the Relation between α- and β-SiB(3)
por: Eklöf, Daniel, et al.
Publicado: (2019)

Understanding Mendelian errors in SNP arrays data using a Gochu Asturcelta pig pedigree: genomic alterations, family size and calling errors
por: Arias, Katherine D., et al.
Publicado: (2022)

Genetic dissection of powdery mildew resistance in interspecific half-sib grapevine families using SNP-based maps
por: Teh, Soon Li, et al.
Publicado: (2016)

Performance comparison of SNP detection tools with illumina exome sequencing data—an assessment using both family pedigree information and sample-matched SNP array data
por: Yi, Ming, et al.
Publicado: (2014)

Estimation of prediction error variances via Monte Carlo sampling methods using different formulations of the prediction error variance
por: Hickey, John M, et al.
Publicado: (2009)

Elucidation of the ‘Honeycrisp’ pedigree through haplotype analysis with a multi-family integrated SNP linkage map and a large apple (Malus×domestica) pedigree-connected SNP data set
por: Howard, Nicholas P, et al.
Publicado: (2017)

A SNP based linkage map of the turkey genome reveals multiple intrachromosomal rearrangements between the Turkey and Chicken genomes
por: Aslam, Muhammad L, et al.
Publicado: (2010)

Power of a dual‐use SNP panel for pedigree reconstruction and population assignment
por: May, Samuel A., et al.
Publicado: (2020)

Pedigree reconstruction from SNP data: parentage assignment, sibship clustering and beyond
por: Huisman, Jisca
Publicado: (2017)

Right-hand-side updating for fast computing of genomic breeding values
por: Calus, Mario PL
Publicado: (2014)

Variance estimates are similar using pedigree or genomic relationships with or without the use of metafounders or the algorithm for proven and young animals
por: Aldridge, Michael N, et al.
Publicado: (2020)

A New Pedigree-Based SNP Haplotype Method for Genomic Polymorphism and Genetic Studies
por: Vadva, Zareen, et al.
Publicado: (2019)

Assessment of the Genetic Diversity of a Local Pig Breed Using Pedigree and SNP Data
por: Krupa, Emil, et al.
Publicado: (2021)

Estimating the purebred-crossbred genetic correlation of body weight in broiler chickens with pedigree or genomic relationships
por: Duenk, Pascal, et al.
Publicado: (2019)

SNPrune: an efficient algorithm to prune large SNP array and sequence datasets based on high linkage disequilibrium
por: Calus, Mario P. L., et al.
Publicado: (2018)

Paternity Assignment in White Guinea Yam (Dioscorea Rotundata) Half-Sib Progenies from Polycross Mating Design Using SNP Markers
por: Norman, Prince E., et al.
Publicado: (2020)

Genomic prediction in hybrid breeding: II. Reciprocal recurrent genomic selection with full-sib and half-sib families
por: Melchinger, Albrecht E., et al.
Publicado: (2023)

Random model approach for QTL mapping in half-sib families
por: Martinez, Mario L, et al.
Publicado: (1999)

Congruence of Additive and Non-Additive Effects on Gene Expression Estimated from Pedigree and SNP Data
por: Powell, Joseph E., et al.
Publicado: (2013)

Pedigree- and SNP-Associated Genetics and Recent Environment are the Major Contributors to Anthropometric and Cardiometabolic Trait Variation
por: Xia, Charley, et al.
Publicado: (2016)

SNP Analysis and Whole Exome Sequencing: Their Application in the Analysis of a Consanguineous Pedigree Segregating Ataxia
por: Nickerson, Sarah L., et al.
Publicado: (2015)

Heritability estimates of distichiasis in Staffordshire bull terriers using pedigrees and genome-wide SNP data
por: Joergensen, Dina, et al.
Publicado: (2022)

Cannot write session to /tmp/vufind_sessions/sess_u2ct9ol6ahp4rqk9u0hshpq93p