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Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus

African swine fever is widespread in Africa but has occasionally been introduced into other continents. In June 2007, African swine fever was isolated in the Caucasus Region of the Republic of Georgia and subsequently in neighboring countries (Armenia, Azerbaijan, and 9 states of the Russian Federat...

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Autores principales: Chapman, David A.G., Darby, Alistair C., Da Silva, Melissa, Upton, Chris, Radford, Alan D., Dixon, Linda K.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Centers for Disease Control and Prevention 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3379899/
https://www.ncbi.nlm.nih.gov/pubmed/21470447
http://dx.doi.org/10.3201/eid1704.101283
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author Chapman, David A.G.
Darby, Alistair C.
Da Silva, Melissa
Upton, Chris
Radford, Alan D.
Dixon, Linda K.
author_facet Chapman, David A.G.
Darby, Alistair C.
Da Silva, Melissa
Upton, Chris
Radford, Alan D.
Dixon, Linda K.
author_sort Chapman, David A.G.
collection PubMed
description African swine fever is widespread in Africa but has occasionally been introduced into other continents. In June 2007, African swine fever was isolated in the Caucasus Region of the Republic of Georgia and subsequently in neighboring countries (Armenia, Azerbaijan, and 9 states of the Russian Federation). Previous data for sequencing of 3 genes indicated that the Georgia 2007/1 isolate is closely related to isolates of genotype II, which has been identified in Mozambique, Madagascar, and Zambia. We report the complete genomic coding sequence of the Georgia 2007/1 isolate and comparison with other isolates. A genome sequence of 189,344 bp encoding 166 open reading frames (ORFs) was obtained. Phylogeny based on concatenated sequences of 125 conserved ORFs showed that this isolate clustered most closely with the Mkuzi 1979 isolate. Some ORFs clustered differently, suggesting that recombination may have occurred. Results provide a baseline for monitoring genomic changes in this virus.
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spelling pubmed-33798992012-06-25 Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus Chapman, David A.G. Darby, Alistair C. Da Silva, Melissa Upton, Chris Radford, Alan D. Dixon, Linda K. Emerg Infect Dis Research African swine fever is widespread in Africa but has occasionally been introduced into other continents. In June 2007, African swine fever was isolated in the Caucasus Region of the Republic of Georgia and subsequently in neighboring countries (Armenia, Azerbaijan, and 9 states of the Russian Federation). Previous data for sequencing of 3 genes indicated that the Georgia 2007/1 isolate is closely related to isolates of genotype II, which has been identified in Mozambique, Madagascar, and Zambia. We report the complete genomic coding sequence of the Georgia 2007/1 isolate and comparison with other isolates. A genome sequence of 189,344 bp encoding 166 open reading frames (ORFs) was obtained. Phylogeny based on concatenated sequences of 125 conserved ORFs showed that this isolate clustered most closely with the Mkuzi 1979 isolate. Some ORFs clustered differently, suggesting that recombination may have occurred. Results provide a baseline for monitoring genomic changes in this virus. Centers for Disease Control and Prevention 2011-04 /pmc/articles/PMC3379899/ /pubmed/21470447 http://dx.doi.org/10.3201/eid1704.101283 Text en https://creativecommons.org/licenses/by/4.0/This is a publication of the U.S. Government. This publication is in the public domain and is therefore without copyright. All text from this work may be reprinted freely. Use of these materials should be properly cited.
spellingShingle Research
Chapman, David A.G.
Darby, Alistair C.
Da Silva, Melissa
Upton, Chris
Radford, Alan D.
Dixon, Linda K.
Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus
title Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus
title_full Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus
title_fullStr Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus
title_full_unstemmed Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus
title_short Genomic Analysis of Highly Virulent Georgia 2007/1 Isolate of African Swine Fever Virus
title_sort genomic analysis of highly virulent georgia 2007/1 isolate of african swine fever virus
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3379899/
https://www.ncbi.nlm.nih.gov/pubmed/21470447
http://dx.doi.org/10.3201/eid1704.101283
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