Cargando…

Epigenetic functions enriched in transcription factors binding to mouse recombination hotspots

The regulatory mechanism of recombination is a fundamental problem in genomics, with wide applications in genome-wide association studies, birth-defect diseases, molecular evolution, cancer research, etc. In mammalian genomes, recombination events cluster into short genomic regions called "reco...

Descripción completa

Detalles Bibliográficos
Autores principales:	Wu, Min, Kwoh, Chee-Keong, Przytycka, Teresa M, Li, Jing, Zheng, Jie
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	BioMed Central 2012
Materias:	Proceedings
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3380740/ https://www.ncbi.nlm.nih.gov/pubmed/22759569 http://dx.doi.org/10.1186/1477-5956-10-S1-S11

Ejemplares similares

LDsplit: screening for cis-regulatory motifs stimulating meiotic recombination hotspots by analysis of DNA sequence polymorphisms
por: Yang, Peng, et al.
Publicado: (2014)

ARG-walker: inference of individual specific strengths of meiotic recombination hotspots by population genomics analysis
por: Chen, Hao, et al.
Publicado: (2015)

LDSplitDB: a database for studies of meiotic recombination hotspots in MHC using human genomic data
por: Guo, Jing, et al.
Publicado: (2018)

Finding trans-regulatory genes and protein complexes modulating meiotic recombination hotspots of human, mouse and yeast
por: Wu, Min, et al.
Publicado: (2014)

Hotspot Hunter: a computational system for large-scale screening and selection of candidate immunological hotspots in pathogen proteomes
por: Zhang, Guang Lan, et al.
Publicado: (2008)

Molecular docking analysis of 2009-H1N1 and 2004-H5N1 influenza virus HLA-B*4405-restricted HA epitope candidates: implications for TCR cross-recognition and vaccine development
por: Su, Chinh TT, et al.
Publicado: (2013)

Integrating diverse biological and computational sources for reliable protein-protein interactions
por: Wu, Min, et al.
Publicado: (2010)

A robust tool for discriminative analysis and feature selection in paired samples impacts the identification of the genes essential for reprogramming lung tissue to adenocarcinoma
por: Toh, Swee Heng, et al.
Publicado: (2011)

Detecting sequence polymorphisms associated with meiotic recombination hotspots in the human genome
por: Zheng, Jie, et al.
Publicado: (2010)

Generalized logical model based on network topology to capture the dynamical trends of cellular signaling pathways
por: Zhang, Fan, et al.
Publicado: (2016)

A linear time algorithm for detecting long genomic regions enriched with a specific combination of epigenetic states
por: Ichikawa, Kazuki, et al.
Publicado: (2015)

Alternative splicing enriched cDNA libraries identify breast cancer-associated transcripts
por: Ferreira, Elisa N, et al.
Publicado: (2010)

Network-based functional enrichment
por: Poirel, Christopher L, et al.
Publicado: (2011)

Virulence network of interacting domains of influenza a and mouse proteins
por: Ng, Teng Ann, et al.
Publicado: (2023)

Power-Law Modeling of Cancer Cell Fates Driven by Signaling Data to Reveal Drug Effects
por: Zhang, Fan, et al.
Publicado: (2016)

Construction of co-complex score matrix for protein complex prediction from AP-MS data
por: Xie, Zhipeng, et al.
Publicado: (2011)

Exploiting ancestral mammalian genomes for the prediction of human transcription factor binding sites
por: Blanchette, Mathieu
Publicado: (2012)

Genome-wide analysis of transcription factor binding sites and their characteristic DNA structures
por: Dai, Zhiming, et al.
Publicado: (2015)

Beta Atomic Contacts: Identifying Critical Specific Contacts in Protein Binding Interfaces
por: Liu, Qian, et al.
Publicado: (2013)

Detection of interacting transcription factors in human tissues using predicted DNA binding affinity
por: Myšičková, Alena, et al.
Publicado: (2012)

Genomic targets of HOP2 are enriched for features found at recombination hotspots
por: Daradur, Jenya, et al.
Publicado: (2023)

Nanopore current transduction analysis of protein binding to non-terminal and terminal DNA regions: analysis of transcription factor binding, retroviral DNA terminus dynamics, and retroviral integrase-DNA binding
por: Winters-Hilt, Stephen, et al.
Publicado: (2007)

Integrating water exclusion theory into βcontacts to predict binding free energy changes and binding hot spots
por: Liu, Qian, et al.
Publicado: (2014)

Pinpointing transcription factor binding sites from ChIP-seq data with SeqSite
por: Wang, Xi, et al.
Publicado: (2011)

A framework for automated enrichment of functionally significant inverted repeats in whole genomes
por: Kandoth, Cyriac, et al.
Publicado: (2010)

Comparing gene annotation enrichment tools for functional modeling of agricultural microarray data
por: Berg, Bart HJ van den, et al.
Publicado: (2009)

Transcriptional regulation prediction of antiestrogen resistance in breast cancer based on RNA polymerase II binding data
por: Zhang, Denan, et al.
Publicado: (2014)

In Silico Prediction of Synthetic Lethality by Meta-Analysis of Genetic Interactions, Functions, and Pathways in Yeast and Human Cancer
por: Wu, Min, et al.
Publicado: (2014)

Extracting rate changes in transcriptional regulation from MEDLINE abstracts
por: Liu, Wenting, et al.
Publicado: (2014)

Chromatin loop anchors predict transcript and exon usage
por: Zhang, Yu, et al.
Publicado: (2021)

Rules of co-occurring mutations characterize the antigenic evolution of human influenza A/H3N2, A/H1N1 and B viruses
por: Chen, Haifen, et al.
Publicado: (2016)

A context-free encoding scheme of protein sequences for predicting antigenicity of diverse influenza A viruses
por: Zhou, Xinrui, et al.
Publicado: (2018)

Benchmarking Human Protein Complexes to Investigate Drug-Related Systems and Evaluate Predicted Protein Complexes
por: Wu, Min, et al.
Publicado: (2013)

Haplotyping via minimum recombinant paradigm
por: Hernández-Sánchez, Jules, et al.
Publicado: (2009)

Enriching rare variants using family-specific linkage information
por: Shi, Gang, et al.
Publicado: (2011)

IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis
por: Zhang, Fan, et al.
Publicado: (2012)

Computational analysis of the receptor binding specificity of novel influenza A/H7N9 viruses
por: Zhou, Xinrui, et al.
Publicado: (2018)

Detecting epigenetic motifs in low coverage and metagenomics settings
por: Beckmann, Noam D, et al.
Publicado: (2014)

Deciphering transcription factor binding patterns from genome-wide high density ChIP-chip tiling array data
por: Li, Juntao, et al.
Publicado: (2011)

Structural analysis of the novel influenza A (H7N9) viral Neuraminidase interactions with current approved neuraminidase inhibitors Oseltamivir, Zanamivir, and Peramivir in the presence of mutation R289K
por: Tran-To Su, Chinh, et al.
Publicado: (2013)

Cannot write session to /tmp/vufind_sessions/sess_9n9n2bjk7r7guc3g2erjb67l9e