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A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids
The storage of soil samples for PLFA analysis can lead to shifts in the microbial community composition. We show here that conserving samples in RNAlater, which is already widely used to store samples for DNA and RNA analysis, proved to be as sufficient as freezing at −20 °C and preferable over stor...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Pergamon Press
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381225/ https://www.ncbi.nlm.nih.gov/pubmed/22865936 http://dx.doi.org/10.1016/j.soilbio.2012.03.029 |
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author | Schnecker, Jörg Wild, Birgit Fuchslueger, Lucia Richter, Andreas |
author_facet | Schnecker, Jörg Wild, Birgit Fuchslueger, Lucia Richter, Andreas |
author_sort | Schnecker, Jörg |
collection | PubMed |
description | The storage of soil samples for PLFA analysis can lead to shifts in the microbial community composition. We show here that conserving samples in RNAlater, which is already widely used to store samples for DNA and RNA analysis, proved to be as sufficient as freezing at −20 °C and preferable over storage at 4 °C for temperate mountain grassland soil. The total amount of extracted PLFAs was not changed by any storage treatment. Storage at 4 °C led to an alteration of seven out of thirty individual biomarkers, while freezing and storage in RNAlater caused changes in the amount of fungal biomarkers but had no effect on any other microbial group. We therefore suggest that RNAlater could be used to preserve soil samples for PLFA analysis when immediate extraction or freezing of samples is not possible, for example during sampling campaigns in remote areas or during transport and shipping. |
format | Online Article Text |
id | pubmed-3381225 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Pergamon Press |
record_format | MEDLINE/PubMed |
spelling | pubmed-33812252012-08-01 A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids Schnecker, Jörg Wild, Birgit Fuchslueger, Lucia Richter, Andreas Soil Biol Biochem Short Communication The storage of soil samples for PLFA analysis can lead to shifts in the microbial community composition. We show here that conserving samples in RNAlater, which is already widely used to store samples for DNA and RNA analysis, proved to be as sufficient as freezing at −20 °C and preferable over storage at 4 °C for temperate mountain grassland soil. The total amount of extracted PLFAs was not changed by any storage treatment. Storage at 4 °C led to an alteration of seven out of thirty individual biomarkers, while freezing and storage in RNAlater caused changes in the amount of fungal biomarkers but had no effect on any other microbial group. We therefore suggest that RNAlater could be used to preserve soil samples for PLFA analysis when immediate extraction or freezing of samples is not possible, for example during sampling campaigns in remote areas or during transport and shipping. Pergamon Press 2012-08 /pmc/articles/PMC3381225/ /pubmed/22865936 http://dx.doi.org/10.1016/j.soilbio.2012.03.029 Text en © 2012 Elsevier Ltd. https://creativecommons.org/licenses/by-nc-nd/3.0/ Open Access under CC BY-NC-ND 3.0 (https://creativecommons.org/licenses/by-nc-nd/3.0/) license |
spellingShingle | Short Communication Schnecker, Jörg Wild, Birgit Fuchslueger, Lucia Richter, Andreas A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids |
title | A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids |
title_full | A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids |
title_fullStr | A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids |
title_full_unstemmed | A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids |
title_short | A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids |
title_sort | field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids |
topic | Short Communication |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381225/ https://www.ncbi.nlm.nih.gov/pubmed/22865936 http://dx.doi.org/10.1016/j.soilbio.2012.03.029 |
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