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A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids

The storage of soil samples for PLFA analysis can lead to shifts in the microbial community composition. We show here that conserving samples in RNAlater, which is already widely used to store samples for DNA and RNA analysis, proved to be as sufficient as freezing at −20 °C and preferable over stor...

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Detalles Bibliográficos
Autores principales: Schnecker, Jörg, Wild, Birgit, Fuchslueger, Lucia, Richter, Andreas
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Pergamon Press 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381225/
https://www.ncbi.nlm.nih.gov/pubmed/22865936
http://dx.doi.org/10.1016/j.soilbio.2012.03.029
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author Schnecker, Jörg
Wild, Birgit
Fuchslueger, Lucia
Richter, Andreas
author_facet Schnecker, Jörg
Wild, Birgit
Fuchslueger, Lucia
Richter, Andreas
author_sort Schnecker, Jörg
collection PubMed
description The storage of soil samples for PLFA analysis can lead to shifts in the microbial community composition. We show here that conserving samples in RNAlater, which is already widely used to store samples for DNA and RNA analysis, proved to be as sufficient as freezing at −20 °C and preferable over storage at 4 °C for temperate mountain grassland soil. The total amount of extracted PLFAs was not changed by any storage treatment. Storage at 4 °C led to an alteration of seven out of thirty individual biomarkers, while freezing and storage in RNAlater caused changes in the amount of fungal biomarkers but had no effect on any other microbial group. We therefore suggest that RNAlater could be used to preserve soil samples for PLFA analysis when immediate extraction or freezing of samples is not possible, for example during sampling campaigns in remote areas or during transport and shipping.
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spelling pubmed-33812252012-08-01 A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids Schnecker, Jörg Wild, Birgit Fuchslueger, Lucia Richter, Andreas Soil Biol Biochem Short Communication The storage of soil samples for PLFA analysis can lead to shifts in the microbial community composition. We show here that conserving samples in RNAlater, which is already widely used to store samples for DNA and RNA analysis, proved to be as sufficient as freezing at −20 °C and preferable over storage at 4 °C for temperate mountain grassland soil. The total amount of extracted PLFAs was not changed by any storage treatment. Storage at 4 °C led to an alteration of seven out of thirty individual biomarkers, while freezing and storage in RNAlater caused changes in the amount of fungal biomarkers but had no effect on any other microbial group. We therefore suggest that RNAlater could be used to preserve soil samples for PLFA analysis when immediate extraction or freezing of samples is not possible, for example during sampling campaigns in remote areas or during transport and shipping. Pergamon Press 2012-08 /pmc/articles/PMC3381225/ /pubmed/22865936 http://dx.doi.org/10.1016/j.soilbio.2012.03.029 Text en © 2012 Elsevier Ltd. https://creativecommons.org/licenses/by-nc-nd/3.0/ Open Access under CC BY-NC-ND 3.0 (https://creativecommons.org/licenses/by-nc-nd/3.0/) license
spellingShingle Short Communication
Schnecker, Jörg
Wild, Birgit
Fuchslueger, Lucia
Richter, Andreas
A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids
title A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids
title_full A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids
title_fullStr A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids
title_full_unstemmed A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids
title_short A field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids
title_sort field method to store samples from temperate mountain grassland soils for analysis of phospholipid fatty acids
topic Short Communication
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3381225/
https://www.ncbi.nlm.nih.gov/pubmed/22865936
http://dx.doi.org/10.1016/j.soilbio.2012.03.029
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