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Molecular Characterization of Cultivated Bromeliad Accessions with Inter-Simple Sequence Repeat (ISSR) Markers

Bromeliads are of great economic importance in flower production; however little information is available with respect to genetic characterization of cultivated bromeliads thus far. In the present study, a selection of cultivated bromeliads was characterized via inter-simple sequence repeat (ISSR) m...

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Autores principales: Zhang, Fei, Ge, Yaying, Wang, Weiyong, Yu, Xinying, Shen, Xiaolan, Liu, Jianxin, Liu, Xiaojing, Tian, Danqing, Shen, Fuquan, Yu, Yongming
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Molecular Diversity Preservation International (MDPI) 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3382752/
https://www.ncbi.nlm.nih.gov/pubmed/22754348
http://dx.doi.org/10.3390/ijms13056040
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author Zhang, Fei
Ge, Yaying
Wang, Weiyong
Yu, Xinying
Shen, Xiaolan
Liu, Jianxin
Liu, Xiaojing
Tian, Danqing
Shen, Fuquan
Yu, Yongming
author_facet Zhang, Fei
Ge, Yaying
Wang, Weiyong
Yu, Xinying
Shen, Xiaolan
Liu, Jianxin
Liu, Xiaojing
Tian, Danqing
Shen, Fuquan
Yu, Yongming
author_sort Zhang, Fei
collection PubMed
description Bromeliads are of great economic importance in flower production; however little information is available with respect to genetic characterization of cultivated bromeliads thus far. In the present study, a selection of cultivated bromeliads was characterized via inter-simple sequence repeat (ISSR) markers with an emphasis on genetic diversity and population structure. Twelve ISSR primers produced 342 bands, of which 287 (~84%) were polymorphic, with polymorphic bands per primer ranging from 17 to 34. The Jaccard’s similarity ranged from 0.08 to 0.89 and averaged ~0.30 for the investigated bromeliads. The Bayesian-based approach, together with the un-weighted paired group method with arithmetic average (UPGMA)-based clustering and the principal coordinate analysis (PCoA), distinctly grouped the bromeliads from Neoregelia, Guzmania, and Vriesea into three separately clusters, well corresponding with their botanical classifications; whereas the bromeliads of Aechmea other than the recently selected hybrids were not well assigned to a cluster. Additionally, ISSR marker was proven efficient for the identification of hybrids and bud sports of cultivated bromeliads. The findings achieved herein will further our knowledge about the genetic variability within cultivated bromeliads and therefore facilitate breeding for new varieties of cultivated bromeliads in future as well.
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spelling pubmed-33827522012-06-29 Molecular Characterization of Cultivated Bromeliad Accessions with Inter-Simple Sequence Repeat (ISSR) Markers Zhang, Fei Ge, Yaying Wang, Weiyong Yu, Xinying Shen, Xiaolan Liu, Jianxin Liu, Xiaojing Tian, Danqing Shen, Fuquan Yu, Yongming Int J Mol Sci Article Bromeliads are of great economic importance in flower production; however little information is available with respect to genetic characterization of cultivated bromeliads thus far. In the present study, a selection of cultivated bromeliads was characterized via inter-simple sequence repeat (ISSR) markers with an emphasis on genetic diversity and population structure. Twelve ISSR primers produced 342 bands, of which 287 (~84%) were polymorphic, with polymorphic bands per primer ranging from 17 to 34. The Jaccard’s similarity ranged from 0.08 to 0.89 and averaged ~0.30 for the investigated bromeliads. The Bayesian-based approach, together with the un-weighted paired group method with arithmetic average (UPGMA)-based clustering and the principal coordinate analysis (PCoA), distinctly grouped the bromeliads from Neoregelia, Guzmania, and Vriesea into three separately clusters, well corresponding with their botanical classifications; whereas the bromeliads of Aechmea other than the recently selected hybrids were not well assigned to a cluster. Additionally, ISSR marker was proven efficient for the identification of hybrids and bud sports of cultivated bromeliads. The findings achieved herein will further our knowledge about the genetic variability within cultivated bromeliads and therefore facilitate breeding for new varieties of cultivated bromeliads in future as well. Molecular Diversity Preservation International (MDPI) 2012-05-18 /pmc/articles/PMC3382752/ /pubmed/22754348 http://dx.doi.org/10.3390/ijms13056040 Text en © 2012 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Zhang, Fei
Ge, Yaying
Wang, Weiyong
Yu, Xinying
Shen, Xiaolan
Liu, Jianxin
Liu, Xiaojing
Tian, Danqing
Shen, Fuquan
Yu, Yongming
Molecular Characterization of Cultivated Bromeliad Accessions with Inter-Simple Sequence Repeat (ISSR) Markers
title Molecular Characterization of Cultivated Bromeliad Accessions with Inter-Simple Sequence Repeat (ISSR) Markers
title_full Molecular Characterization of Cultivated Bromeliad Accessions with Inter-Simple Sequence Repeat (ISSR) Markers
title_fullStr Molecular Characterization of Cultivated Bromeliad Accessions with Inter-Simple Sequence Repeat (ISSR) Markers
title_full_unstemmed Molecular Characterization of Cultivated Bromeliad Accessions with Inter-Simple Sequence Repeat (ISSR) Markers
title_short Molecular Characterization of Cultivated Bromeliad Accessions with Inter-Simple Sequence Repeat (ISSR) Markers
title_sort molecular characterization of cultivated bromeliad accessions with inter-simple sequence repeat (issr) markers
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3382752/
https://www.ncbi.nlm.nih.gov/pubmed/22754348
http://dx.doi.org/10.3390/ijms13056040
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