Cargando…
Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method
The X-level Approach Reaction Noise Estimator (XARNES) method has been developed previously to study reaction noise in well mixed reaction volumes. The method is a typical moment closure method and it works by closing the infinite hierarchy of equations that describe moments of the particle number d...
Autor principal: | |
---|---|
Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2012
|
Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384249/ https://www.ncbi.nlm.nih.gov/pubmed/22500492 http://dx.doi.org/10.1186/1742-4682-9-12 |
_version_ | 1782236682912792576 |
---|---|
author | Konkoli, Zoran |
author_facet | Konkoli, Zoran |
author_sort | Konkoli, Zoran |
collection | PubMed |
description | The X-level Approach Reaction Noise Estimator (XARNES) method has been developed previously to study reaction noise in well mixed reaction volumes. The method is a typical moment closure method and it works by closing the infinite hierarchy of equations that describe moments of the particle number distribution function. This is done by using correlation forms which describe correlation effects in a strict mathematical way. The variable X is used to specify which correlation effects (forms) are included in the description. Previously, it was argued, in a rather informal way, that the method should work well in situations where the particle number distribution function is Poisson-like. Numerical tests confirmed this. It was shown that the predictive power of the method increases, i.e. the agreement between the theory and simulations improves, if X is increased. In here, these features of the method are explained by using rigorous mathematical reasoning. Three derivative matching theoremsare proven which show that the observed numerical behavior is generic to the method. |
format | Online Article Text |
id | pubmed-3384249 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-33842492012-06-29 Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method Konkoli, Zoran Theor Biol Med Model Research The X-level Approach Reaction Noise Estimator (XARNES) method has been developed previously to study reaction noise in well mixed reaction volumes. The method is a typical moment closure method and it works by closing the infinite hierarchy of equations that describe moments of the particle number distribution function. This is done by using correlation forms which describe correlation effects in a strict mathematical way. The variable X is used to specify which correlation effects (forms) are included in the description. Previously, it was argued, in a rather informal way, that the method should work well in situations where the particle number distribution function is Poisson-like. Numerical tests confirmed this. It was shown that the predictive power of the method increases, i.e. the agreement between the theory and simulations improves, if X is increased. In here, these features of the method are explained by using rigorous mathematical reasoning. Three derivative matching theoremsare proven which show that the observed numerical behavior is generic to the method. BioMed Central 2012-04-13 /pmc/articles/PMC3384249/ /pubmed/22500492 http://dx.doi.org/10.1186/1742-4682-9-12 Text en Copyright ©2012 Konkoli; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an Open Access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Konkoli, Zoran Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method |
title | Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method |
title_full | Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method |
title_fullStr | Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method |
title_full_unstemmed | Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method |
title_short | Mathematical explanation of the predictive power of the X-level approach reaction noise estimator method |
title_sort | mathematical explanation of the predictive power of the x-level approach reaction noise estimator method |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384249/ https://www.ncbi.nlm.nih.gov/pubmed/22500492 http://dx.doi.org/10.1186/1742-4682-9-12 |
work_keys_str_mv | AT konkolizoran mathematicalexplanationofthepredictivepowerofthexlevelapproachreactionnoiseestimatormethod |