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Viability Conditions for a Compartmentalized Protometabolic System: A Semi-Empirical Approach

In this work we attempt to find out the extent to which realistic prebiotic compartments, such as fatty acid vesicles, would constrain the chemical network dynamics that could have sustained a minimal form of metabolism. We combine experimental and simulation results to establish the conditions unde...

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Detalles Bibliográficos
Autores principales: Piedrafita, Gabriel, Ruiz-Mirazo, Kepa, Monnard, Pierre-Alain, Cornish-Bowden, Athel, Montero, Francisco
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384665/
https://www.ncbi.nlm.nih.gov/pubmed/22761803
http://dx.doi.org/10.1371/journal.pone.0039480
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author Piedrafita, Gabriel
Ruiz-Mirazo, Kepa
Monnard, Pierre-Alain
Cornish-Bowden, Athel
Montero, Francisco
author_facet Piedrafita, Gabriel
Ruiz-Mirazo, Kepa
Monnard, Pierre-Alain
Cornish-Bowden, Athel
Montero, Francisco
author_sort Piedrafita, Gabriel
collection PubMed
description In this work we attempt to find out the extent to which realistic prebiotic compartments, such as fatty acid vesicles, would constrain the chemical network dynamics that could have sustained a minimal form of metabolism. We combine experimental and simulation results to establish the conditions under which a reaction network with a catalytically closed organization (more specifically, an ([Image: see text])-system) would overcome the potential problem of self-suffocation that arises from the limited accessibility of nutrients to its internal reaction domain. The relationship between the permeability of the membrane, the lifetime of the key catalysts and their efficiency (reaction rate enhancement) turns out to be critical. In particular, we show how permeability values constrain the characteristic time scale of the bounded protometabolic processes. From this concrete and illustrative example we finally extend the discussion to a wider evolutionary context.
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spelling pubmed-33846652012-07-03 Viability Conditions for a Compartmentalized Protometabolic System: A Semi-Empirical Approach Piedrafita, Gabriel Ruiz-Mirazo, Kepa Monnard, Pierre-Alain Cornish-Bowden, Athel Montero, Francisco PLoS One Research Article In this work we attempt to find out the extent to which realistic prebiotic compartments, such as fatty acid vesicles, would constrain the chemical network dynamics that could have sustained a minimal form of metabolism. We combine experimental and simulation results to establish the conditions under which a reaction network with a catalytically closed organization (more specifically, an ([Image: see text])-system) would overcome the potential problem of self-suffocation that arises from the limited accessibility of nutrients to its internal reaction domain. The relationship between the permeability of the membrane, the lifetime of the key catalysts and their efficiency (reaction rate enhancement) turns out to be critical. In particular, we show how permeability values constrain the characteristic time scale of the bounded protometabolic processes. From this concrete and illustrative example we finally extend the discussion to a wider evolutionary context. Public Library of Science 2012-06-27 /pmc/articles/PMC3384665/ /pubmed/22761803 http://dx.doi.org/10.1371/journal.pone.0039480 Text en Piedrafita et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Piedrafita, Gabriel
Ruiz-Mirazo, Kepa
Monnard, Pierre-Alain
Cornish-Bowden, Athel
Montero, Francisco
Viability Conditions for a Compartmentalized Protometabolic System: A Semi-Empirical Approach
title Viability Conditions for a Compartmentalized Protometabolic System: A Semi-Empirical Approach
title_full Viability Conditions for a Compartmentalized Protometabolic System: A Semi-Empirical Approach
title_fullStr Viability Conditions for a Compartmentalized Protometabolic System: A Semi-Empirical Approach
title_full_unstemmed Viability Conditions for a Compartmentalized Protometabolic System: A Semi-Empirical Approach
title_short Viability Conditions for a Compartmentalized Protometabolic System: A Semi-Empirical Approach
title_sort viability conditions for a compartmentalized protometabolic system: a semi-empirical approach
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3384665/
https://www.ncbi.nlm.nih.gov/pubmed/22761803
http://dx.doi.org/10.1371/journal.pone.0039480
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