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Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T))
Saccharomonospora marina Liu et al. 2010 is a member of the genus Saccharomonospora, in the family Pseudonocardiaceae that is poorly characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as leaf litter, m...
Autores principales: | , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387791/ https://www.ncbi.nlm.nih.gov/pubmed/22768369 http://dx.doi.org/10.4056/sigs.2655905 |
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author | Klenk, Hans-Peter Lu, Megan Lucas, Susan Lapidus, Alla Copeland, Alex Pitluck, Sam Goodwin, Lynne A. Han, Cliff Tapia, Roxanne Brambilla, Evelyne-Marie Pötter, Gabriele Land, Miriam Ivanova, Natalia Rohde, Manfred Göker, Markus Detter, John C. Li, Wen-Jun Kyrpides, Nikos C. Woyke, Tanja |
author_facet | Klenk, Hans-Peter Lu, Megan Lucas, Susan Lapidus, Alla Copeland, Alex Pitluck, Sam Goodwin, Lynne A. Han, Cliff Tapia, Roxanne Brambilla, Evelyne-Marie Pötter, Gabriele Land, Miriam Ivanova, Natalia Rohde, Manfred Göker, Markus Detter, John C. Li, Wen-Jun Kyrpides, Nikos C. Woyke, Tanja |
author_sort | Klenk, Hans-Peter |
collection | PubMed |
description | Saccharomonospora marina Liu et al. 2010 is a member of the genus Saccharomonospora, in the family Pseudonocardiaceae that is poorly characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Here we describe the features of this organism, together with the complete genome sequence (permanent draft status), and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI). |
format | Online Article Text |
id | pubmed-3387791 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-33877912012-07-05 Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) Klenk, Hans-Peter Lu, Megan Lucas, Susan Lapidus, Alla Copeland, Alex Pitluck, Sam Goodwin, Lynne A. Han, Cliff Tapia, Roxanne Brambilla, Evelyne-Marie Pötter, Gabriele Land, Miriam Ivanova, Natalia Rohde, Manfred Göker, Markus Detter, John C. Li, Wen-Jun Kyrpides, Nikos C. Woyke, Tanja Stand Genomic Sci Short Genome Reports Saccharomonospora marina Liu et al. 2010 is a member of the genus Saccharomonospora, in the family Pseudonocardiaceae that is poorly characterized at the genome level thus far. Members of the genus Saccharomonospora are of interest because they originate from diverse habitats, such as leaf litter, manure, compost, surface of peat, moist, over-heated grain, and ocean sediment, where they might play a role in the primary degradation of plant material by attacking hemicellulose. Organisms belonging to the genus are usually Gram-positive staining, non-acid fast, and classify among the actinomycetes. Here we describe the features of this organism, together with the complete genome sequence (permanent draft status), and annotation. The 5,965,593 bp long chromosome with its 5,727 protein-coding and 57 RNA genes was sequenced as part of the DOE funded Community Sequencing Program (CSP) 2010 at the Joint Genome Institute (JGI). Michigan State University 2012-05-15 /pmc/articles/PMC3387791/ /pubmed/22768369 http://dx.doi.org/10.4056/sigs.2655905 Text en |
spellingShingle | Short Genome Reports Klenk, Hans-Peter Lu, Megan Lucas, Susan Lapidus, Alla Copeland, Alex Pitluck, Sam Goodwin, Lynne A. Han, Cliff Tapia, Roxanne Brambilla, Evelyne-Marie Pötter, Gabriele Land, Miriam Ivanova, Natalia Rohde, Manfred Göker, Markus Detter, John C. Li, Wen-Jun Kyrpides, Nikos C. Woyke, Tanja Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) |
title | Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) |
title_full | Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) |
title_fullStr | Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) |
title_full_unstemmed | Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) |
title_short | Genome sequence of the ocean sediment bacterium Saccharomonospora marina type strain (XMU15(T)) |
title_sort | genome sequence of the ocean sediment bacterium saccharomonospora marina type strain (xmu15(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387791/ https://www.ncbi.nlm.nih.gov/pubmed/22768369 http://dx.doi.org/10.4056/sigs.2655905 |
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