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Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T))
Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of interest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4(T) is the first to be seque...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387795/ https://www.ncbi.nlm.nih.gov/pubmed/22768361 http://dx.doi.org/10.4056/sigs.2746047 |
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author | Anderson, Iain Held, Brittany Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. |
author_facet | Anderson, Iain Held, Brittany Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. |
author_sort | Anderson, Iain |
collection | PubMed |
description | Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of interest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4(T) is the first to be sequenced for a representative of the class Holophagae. Here we describe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Online Article Text |
id | pubmed-3387795 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-33877952012-07-05 Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) Anderson, Iain Held, Brittany Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of interest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4(T) is the first to be sequenced for a representative of the class Holophagae. Here we describe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2012-05-04 /pmc/articles/PMC3387795/ /pubmed/22768361 http://dx.doi.org/10.4056/sigs.2746047 Text en |
spellingShingle | Short Genome Reports Anderson, Iain Held, Brittany Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) |
title | Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) |
title_full | Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) |
title_fullStr | Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) |
title_full_unstemmed | Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) |
title_short | Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) |
title_sort | genome sequence of the homoacetogenic bacterium holophaga foetida type strain (tmbs4(t)) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387795/ https://www.ncbi.nlm.nih.gov/pubmed/22768361 http://dx.doi.org/10.4056/sigs.2746047 |
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