Cargando…

Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T))

Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of interest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4(T) is the first to be seque...

Descripción completa

Detalles Bibliográficos
Autores principales: Anderson, Iain, Held, Brittany, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Tice, Hope, Del Rio, Tijana Glavina, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Goodwin, Lynne A., Pitluck, Sam, Liolios, Konstantinos, Mavromatis, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Brambilla, Evelyne-Marie, Rohde, Manfred, Spring, Stefan, Göker, Markus, Detter, John C., Woyke, Tanja, Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Klenk, Hans-Peter, Kyrpides, Nikos C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387795/
https://www.ncbi.nlm.nih.gov/pubmed/22768361
http://dx.doi.org/10.4056/sigs.2746047
_version_ 1782237122587000832
author Anderson, Iain
Held, Brittany
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Spring, Stefan
Göker, Markus
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_facet Anderson, Iain
Held, Brittany
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Spring, Stefan
Göker, Markus
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
author_sort Anderson, Iain
collection PubMed
description Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of interest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4(T) is the first to be sequenced for a representative of the class Holophagae. Here we describe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
format Online
Article
Text
id pubmed-3387795
institution National Center for Biotechnology Information
language English
publishDate 2012
publisher Michigan State University
record_format MEDLINE/PubMed
spelling pubmed-33877952012-07-05 Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T)) Anderson, Iain Held, Brittany Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Mavromatis, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Klenk, Hans-Peter Kyrpides, Nikos C. Stand Genomic Sci Short Genome Reports Holophaga foetida Liesack et al. 1995 is a member of the phylum Acidobacteria and is of interest for its ability to anaerobically degrade aromatic compounds and for its production of volatile sulfur compounds through a unique pathway. The genome of H. foetida strain TMBS4(T) is the first to be sequenced for a representative of the class Holophagae. Here we describe the features of this organism, together with the complete genome sequence (improved high quality draft), and annotation. The 4,127,237 bp long chromosome with its 3,615 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2012-05-04 /pmc/articles/PMC3387795/ /pubmed/22768361 http://dx.doi.org/10.4056/sigs.2746047 Text en
spellingShingle Short Genome Reports
Anderson, Iain
Held, Brittany
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Goodwin, Lynne A.
Pitluck, Sam
Liolios, Konstantinos
Mavromatis, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Spring, Stefan
Göker, Markus
Detter, John C.
Woyke, Tanja
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Klenk, Hans-Peter
Kyrpides, Nikos C.
Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T))
title Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T))
title_full Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T))
title_fullStr Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T))
title_full_unstemmed Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T))
title_short Genome sequence of the homoacetogenic bacterium Holophaga foetida type strain (TMBS4(T))
title_sort genome sequence of the homoacetogenic bacterium holophaga foetida type strain (tmbs4(t))
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387795/
https://www.ncbi.nlm.nih.gov/pubmed/22768361
http://dx.doi.org/10.4056/sigs.2746047
work_keys_str_mv AT andersoniain genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT heldbrittany genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT lapidusalla genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT nolanmatt genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT lucassusan genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT ticehope genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT delriotijanaglavina genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT chengjanfang genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT hancliff genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT tapiaroxanne genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT goodwinlynnea genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT pitlucksam genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT liolioskonstantinos genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT mavromatiskonstantinos genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT paganiioanna genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT ivanovanatalia genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT mikhailovanatalia genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT patiamrita genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT chenamy genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT palaniappankrishna genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT landmiriam genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT brambillaevelynemarie genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT rohdemanfred genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT springstefan genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT gokermarkus genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT detterjohnc genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT woyketanja genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT bristowjames genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT eisenjonathana genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT markowitzvictor genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT hugenholtzphilip genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT klenkhanspeter genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t
AT kyrpidesnikosc genomesequenceofthehomoacetogenicbacteriumholophagafoetidatypestraintmbs4t