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Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains
Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium was first isolated from chlorinated solvent conta...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387798/ https://www.ncbi.nlm.nih.gov/pubmed/22768368 http://dx.doi.org/10.4056/sigs.2806097 |
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author | Siddaramappa, Shivakumara Challacombe, Jean F. Delano, Susana F. Green, Lance D. Daligault, Hajnalka Bruce, David Detter, Chris Tapia, Roxanne Han, Shunsheng Goodwin, Lynne Han, James Woyke, Tanja Pitluck, Sam Pennacchio, Len Nolan, Matt Land, Miriam Chang, Yun-Juan Kyrpides, Nikos C. Ovchinnikova, Galina Hauser, Loren Lapidus, Alla Yan, Jun Bowman, Kimberly S. da Costa, Milton S. Rainey, Fred A. Moe, William M. |
author_facet | Siddaramappa, Shivakumara Challacombe, Jean F. Delano, Susana F. Green, Lance D. Daligault, Hajnalka Bruce, David Detter, Chris Tapia, Roxanne Han, Shunsheng Goodwin, Lynne Han, James Woyke, Tanja Pitluck, Sam Pennacchio, Len Nolan, Matt Land, Miriam Chang, Yun-Juan Kyrpides, Nikos C. Ovchinnikova, Galina Hauser, Loren Lapidus, Alla Yan, Jun Bowman, Kimberly S. da Costa, Milton S. Rainey, Fred A. Moe, William M. |
author_sort | Siddaramappa, Shivakumara |
collection | PubMed |
description | Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium was first isolated from chlorinated solvent contaminated groundwater at a Superfund site located near Baton Rouge, Louisiana, USA. D. lykanthroporepellens was of interest for genome sequencing for two reasons: (a) an unusual ability to couple growth with reductive dechlorination of environmentally important polychlorinated aliphatic alkanes and (b) a phylogenetic position that is distant from previously sequenced bacteria. The 1,686,510 bp circular chromosome of strain BL-DC-9(T) contains 1,720 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small subunit rRNA (16S) locus. |
format | Online Article Text |
id | pubmed-3387798 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-33877982012-07-05 Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains Siddaramappa, Shivakumara Challacombe, Jean F. Delano, Susana F. Green, Lance D. Daligault, Hajnalka Bruce, David Detter, Chris Tapia, Roxanne Han, Shunsheng Goodwin, Lynne Han, James Woyke, Tanja Pitluck, Sam Pennacchio, Len Nolan, Matt Land, Miriam Chang, Yun-Juan Kyrpides, Nikos C. Ovchinnikova, Galina Hauser, Loren Lapidus, Alla Yan, Jun Bowman, Kimberly S. da Costa, Milton S. Rainey, Fred A. Moe, William M. Stand Genomic Sci Short Genome Reports Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium was first isolated from chlorinated solvent contaminated groundwater at a Superfund site located near Baton Rouge, Louisiana, USA. D. lykanthroporepellens was of interest for genome sequencing for two reasons: (a) an unusual ability to couple growth with reductive dechlorination of environmentally important polychlorinated aliphatic alkanes and (b) a phylogenetic position that is distant from previously sequenced bacteria. The 1,686,510 bp circular chromosome of strain BL-DC-9(T) contains 1,720 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small subunit rRNA (16S) locus. Michigan State University 2012-05-15 /pmc/articles/PMC3387798/ /pubmed/22768368 http://dx.doi.org/10.4056/sigs.2806097 Text en |
spellingShingle | Short Genome Reports Siddaramappa, Shivakumara Challacombe, Jean F. Delano, Susana F. Green, Lance D. Daligault, Hajnalka Bruce, David Detter, Chris Tapia, Roxanne Han, Shunsheng Goodwin, Lynne Han, James Woyke, Tanja Pitluck, Sam Pennacchio, Len Nolan, Matt Land, Miriam Chang, Yun-Juan Kyrpides, Nikos C. Ovchinnikova, Galina Hauser, Loren Lapidus, Alla Yan, Jun Bowman, Kimberly S. da Costa, Milton S. Rainey, Fred A. Moe, William M. Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains |
title | Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains |
title_full | Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains |
title_fullStr | Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains |
title_full_unstemmed | Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains |
title_short | Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains |
title_sort | complete genome sequence of dehalogenimonas lykanthroporepellens type strain (bl-dc-9(t)) and comparison to “dehalococcoides” strains |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387798/ https://www.ncbi.nlm.nih.gov/pubmed/22768368 http://dx.doi.org/10.4056/sigs.2806097 |
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