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Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains

Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium was first isolated from chlorinated solvent conta...

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Autores principales: Siddaramappa, Shivakumara, Challacombe, Jean F., Delano, Susana F., Green, Lance D., Daligault, Hajnalka, Bruce, David, Detter, Chris, Tapia, Roxanne, Han, Shunsheng, Goodwin, Lynne, Han, James, Woyke, Tanja, Pitluck, Sam, Pennacchio, Len, Nolan, Matt, Land, Miriam, Chang, Yun-Juan, Kyrpides, Nikos C., Ovchinnikova, Galina, Hauser, Loren, Lapidus, Alla, Yan, Jun, Bowman, Kimberly S., da Costa, Milton S., Rainey, Fred A., Moe, William M.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387798/
https://www.ncbi.nlm.nih.gov/pubmed/22768368
http://dx.doi.org/10.4056/sigs.2806097
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author Siddaramappa, Shivakumara
Challacombe, Jean F.
Delano, Susana F.
Green, Lance D.
Daligault, Hajnalka
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Shunsheng
Goodwin, Lynne
Han, James
Woyke, Tanja
Pitluck, Sam
Pennacchio, Len
Nolan, Matt
Land, Miriam
Chang, Yun-Juan
Kyrpides, Nikos C.
Ovchinnikova, Galina
Hauser, Loren
Lapidus, Alla
Yan, Jun
Bowman, Kimberly S.
da Costa, Milton S.
Rainey, Fred A.
Moe, William M.
author_facet Siddaramappa, Shivakumara
Challacombe, Jean F.
Delano, Susana F.
Green, Lance D.
Daligault, Hajnalka
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Shunsheng
Goodwin, Lynne
Han, James
Woyke, Tanja
Pitluck, Sam
Pennacchio, Len
Nolan, Matt
Land, Miriam
Chang, Yun-Juan
Kyrpides, Nikos C.
Ovchinnikova, Galina
Hauser, Loren
Lapidus, Alla
Yan, Jun
Bowman, Kimberly S.
da Costa, Milton S.
Rainey, Fred A.
Moe, William M.
author_sort Siddaramappa, Shivakumara
collection PubMed
description Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium was first isolated from chlorinated solvent contaminated groundwater at a Superfund site located near Baton Rouge, Louisiana, USA. D. lykanthroporepellens was of interest for genome sequencing for two reasons: (a) an unusual ability to couple growth with reductive dechlorination of environmentally important polychlorinated aliphatic alkanes and (b) a phylogenetic position that is distant from previously sequenced bacteria. The 1,686,510 bp circular chromosome of strain BL-DC-9(T) contains 1,720 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small subunit rRNA (16S) locus.
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spelling pubmed-33877982012-07-05 Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains Siddaramappa, Shivakumara Challacombe, Jean F. Delano, Susana F. Green, Lance D. Daligault, Hajnalka Bruce, David Detter, Chris Tapia, Roxanne Han, Shunsheng Goodwin, Lynne Han, James Woyke, Tanja Pitluck, Sam Pennacchio, Len Nolan, Matt Land, Miriam Chang, Yun-Juan Kyrpides, Nikos C. Ovchinnikova, Galina Hauser, Loren Lapidus, Alla Yan, Jun Bowman, Kimberly S. da Costa, Milton S. Rainey, Fred A. Moe, William M. Stand Genomic Sci Short Genome Reports Dehalogenimonas lykanthroporepellens is the type species of the genus Dehalogenimonas, which belongs to a deeply branching lineage within the phylum Chloroflexi. This strictly anaerobic, mesophilic, non spore-forming, Gram-negative staining bacterium was first isolated from chlorinated solvent contaminated groundwater at a Superfund site located near Baton Rouge, Louisiana, USA. D. lykanthroporepellens was of interest for genome sequencing for two reasons: (a) an unusual ability to couple growth with reductive dechlorination of environmentally important polychlorinated aliphatic alkanes and (b) a phylogenetic position that is distant from previously sequenced bacteria. The 1,686,510 bp circular chromosome of strain BL-DC-9(T) contains 1,720 predicted protein coding genes, 47 tRNA genes, a single large subunit rRNA (23S-5S) locus, and a single, orphan, small subunit rRNA (16S) locus. Michigan State University 2012-05-15 /pmc/articles/PMC3387798/ /pubmed/22768368 http://dx.doi.org/10.4056/sigs.2806097 Text en
spellingShingle Short Genome Reports
Siddaramappa, Shivakumara
Challacombe, Jean F.
Delano, Susana F.
Green, Lance D.
Daligault, Hajnalka
Bruce, David
Detter, Chris
Tapia, Roxanne
Han, Shunsheng
Goodwin, Lynne
Han, James
Woyke, Tanja
Pitluck, Sam
Pennacchio, Len
Nolan, Matt
Land, Miriam
Chang, Yun-Juan
Kyrpides, Nikos C.
Ovchinnikova, Galina
Hauser, Loren
Lapidus, Alla
Yan, Jun
Bowman, Kimberly S.
da Costa, Milton S.
Rainey, Fred A.
Moe, William M.
Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains
title Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains
title_full Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains
title_fullStr Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains
title_full_unstemmed Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains
title_short Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to “Dehalococcoides” strains
title_sort complete genome sequence of dehalogenimonas lykanthroporepellens type strain (bl-dc-9(t)) and comparison to “dehalococcoides” strains
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387798/
https://www.ncbi.nlm.nih.gov/pubmed/22768368
http://dx.doi.org/10.4056/sigs.2806097
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