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Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class ‘Sphingobacteria’ that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via ‘ixotrophy’. S. grandis strain Sa g1 was isolated from decaying crab carapace...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387799/ https://www.ncbi.nlm.nih.gov/pubmed/22768364 http://dx.doi.org/10.4056/sigs.2816096 |
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author | Mavromatis, Konstantinos Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Bruce, David Goodwin, Lynne A. Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja |
author_facet | Mavromatis, Konstantinos Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Bruce, David Goodwin, Lynne A. Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja |
author_sort | Mavromatis, Konstantinos |
collection | PubMed |
description | Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class ‘Sphingobacteria’ that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via ‘ixotrophy’. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 protein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Online Article Text |
id | pubmed-3387799 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-33877992012-07-05 Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) Mavromatis, Konstantinos Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Bruce, David Goodwin, Lynne A. Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja Stand Genomic Sci Short Genome Reports Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class ‘Sphingobacteria’ that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via ‘ixotrophy’. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 protein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2012-05-04 /pmc/articles/PMC3387799/ /pubmed/22768364 http://dx.doi.org/10.4056/sigs.2816096 Text en |
spellingShingle | Short Genome Reports Mavromatis, Konstantinos Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Bruce, David Goodwin, Lynne A. Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) |
title | Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) |
title_full | Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) |
title_fullStr | Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) |
title_full_unstemmed | Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) |
title_short | Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) |
title_sort | permanent draft genome sequence of the gliding predator saprospira grandis strain sa g1 (= hr1) |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387799/ https://www.ncbi.nlm.nih.gov/pubmed/22768364 http://dx.doi.org/10.4056/sigs.2816096 |
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