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Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)

Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class ‘Sphingobacteria’ that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via ‘ixotrophy’. S. grandis strain Sa g1 was isolated from decaying crab carapace...

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Autores principales: Mavromatis, Konstantinos, Chertkov, Olga, Lapidus, Alla, Nolan, Matt, Lucas, Susan, Tice, Hope, Del Rio, Tijana Glavina, Cheng, Jan-Fang, Han, Cliff, Tapia, Roxanne, Bruce, David, Goodwin, Lynne A., Pitluck, Sam, Huntemann, Marcel, Liolios, Konstantinos, Pagani, Ioanna, Ivanova, Natalia, Mikhailova, Natalia, Pati, Amrita, Chen, Amy, Palaniappan, Krishna, Land, Miriam, Brambilla, Evelyne-Marie, Rohde, Manfred, Spring, Stefan, Göker, Markus, Detter, John C., Bristow, James, Eisen, Jonathan A., Markowitz, Victor, Hugenholtz, Philip, Kyrpides, Nikos C., Klenk, Hans-Peter, Woyke, Tanja
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Michigan State University 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387799/
https://www.ncbi.nlm.nih.gov/pubmed/22768364
http://dx.doi.org/10.4056/sigs.2816096
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author Mavromatis, Konstantinos
Chertkov, Olga
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Bruce, David
Goodwin, Lynne A.
Pitluck, Sam
Huntemann, Marcel
Liolios, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Spring, Stefan
Göker, Markus
Detter, John C.
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Woyke, Tanja
author_facet Mavromatis, Konstantinos
Chertkov, Olga
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Bruce, David
Goodwin, Lynne A.
Pitluck, Sam
Huntemann, Marcel
Liolios, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Spring, Stefan
Göker, Markus
Detter, John C.
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Woyke, Tanja
author_sort Mavromatis, Konstantinos
collection PubMed
description Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class ‘Sphingobacteria’ that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via ‘ixotrophy’. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 protein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.
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spelling pubmed-33877992012-07-05 Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1) Mavromatis, Konstantinos Chertkov, Olga Lapidus, Alla Nolan, Matt Lucas, Susan Tice, Hope Del Rio, Tijana Glavina Cheng, Jan-Fang Han, Cliff Tapia, Roxanne Bruce, David Goodwin, Lynne A. Pitluck, Sam Huntemann, Marcel Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mikhailova, Natalia Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Göker, Markus Detter, John C. Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Woyke, Tanja Stand Genomic Sci Short Genome Reports Saprospira grandis Gross 1911 is a member of the Saprospiraceae, a family in the class ‘Sphingobacteria’ that remains poorly characterized at the genomic level. The species is known for preying on other marine bacteria via ‘ixotrophy’. S. grandis strain Sa g1 was isolated from decaying crab carapace in France and was selected for genome sequencing because of its isolated location in the tree of life. Only one type strain genome has been published so far from the Saprospiraceae, while the sequence of strain Sa g1 represents the second genome to be published from a non-type strain of S. grandis. Here we describe the features of this organism, together with the complete genome sequence and annotation. The 4,495,250 bp long Improved-High-Quality draft of the genome with its 3,536 protein-coding and 62 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2012-05-04 /pmc/articles/PMC3387799/ /pubmed/22768364 http://dx.doi.org/10.4056/sigs.2816096 Text en
spellingShingle Short Genome Reports
Mavromatis, Konstantinos
Chertkov, Olga
Lapidus, Alla
Nolan, Matt
Lucas, Susan
Tice, Hope
Del Rio, Tijana Glavina
Cheng, Jan-Fang
Han, Cliff
Tapia, Roxanne
Bruce, David
Goodwin, Lynne A.
Pitluck, Sam
Huntemann, Marcel
Liolios, Konstantinos
Pagani, Ioanna
Ivanova, Natalia
Mikhailova, Natalia
Pati, Amrita
Chen, Amy
Palaniappan, Krishna
Land, Miriam
Brambilla, Evelyne-Marie
Rohde, Manfred
Spring, Stefan
Göker, Markus
Detter, John C.
Bristow, James
Eisen, Jonathan A.
Markowitz, Victor
Hugenholtz, Philip
Kyrpides, Nikos C.
Klenk, Hans-Peter
Woyke, Tanja
Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
title Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
title_full Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
title_fullStr Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
title_full_unstemmed Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
title_short Permanent draft genome sequence of the gliding predator Saprospira grandis strain Sa g1 (= HR1)
title_sort permanent draft genome sequence of the gliding predator saprospira grandis strain sa g1 (= hr1)
topic Short Genome Reports
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3387799/
https://www.ncbi.nlm.nih.gov/pubmed/22768364
http://dx.doi.org/10.4056/sigs.2816096
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