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Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray
INTRODUCTION: Septic-shock-associated acute kidney injury (SSAKI) carries high morbidity in the pediatric population. Effective treatment strategies are lacking, in part due to poor detection and prediction. There is a need to identify novel candidate biomarkers of SSAKI. The objective of our study...
Autores principales: | , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
BioMed Central
2011
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3388679/ https://www.ncbi.nlm.nih.gov/pubmed/22098946 http://dx.doi.org/10.1186/cc10554 |
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author | Basu, Rajit K Standage, Stephen W Cvijanovich, Natalie Z Allen, Geoffrey L Thomas, Neal J Freishtat, Robert J Anas, Nick Meyer, Keith Checchia, Paul A Lin, Richard Shanley, Thomas P Bigham, Michael T Wheeler, Derek S Devarajan, Prasad Goldstein, Stuart L Wong, Hector R |
author_facet | Basu, Rajit K Standage, Stephen W Cvijanovich, Natalie Z Allen, Geoffrey L Thomas, Neal J Freishtat, Robert J Anas, Nick Meyer, Keith Checchia, Paul A Lin, Richard Shanley, Thomas P Bigham, Michael T Wheeler, Derek S Devarajan, Prasad Goldstein, Stuart L Wong, Hector R |
author_sort | Basu, Rajit K |
collection | PubMed |
description | INTRODUCTION: Septic-shock-associated acute kidney injury (SSAKI) carries high morbidity in the pediatric population. Effective treatment strategies are lacking, in part due to poor detection and prediction. There is a need to identify novel candidate biomarkers of SSAKI. The objective of our study was to determine whether microarray data from children with septic shock could be used to derive a panel of candidate biomarkers for predicting SSAKI. METHODS: A retrospective cohort study compared microarray data representing the first 24 hours of admission for 179 children with septic shock with those of 53 age-matched normal controls. SSAKI was defined as a >200% increase of baseline serum creatinine, persistent to 7 days after admission. RESULTS: Patients with SSAKI (n = 31) and patients without SSAKI (n = 148) were clinically similar, but SSAKI carried a higher mortality (45% vs. 10%). Twenty-one unique gene probes were upregulated in SSAKI patients versus patients without SSAKI. Using leave-one-out cross-validation and class prediction modeling, these probes predicted SSAKI with a sensitivity of 98% (95% confidence interval (CI) = 81 to 100) and a specificity of 80% (95% CI = 72 to 86). Serum protein levels of two specific genes showed high sensitivity for predicting SSAKI: matrix metalloproteinase-8 (89%, 95% CI = 64 to 98) and elastase-2 (83%, 95% CI = 58 to 96). Both biomarkers carried a negative predictive value of 95%. When applied to a validation cohort, although both biomarkers carried low specificity (matrix metalloproteinase-8: 41%, 95% CI = 28 to 50; and elastase-2: 49%, 95% CI = 36 to 62), they carried high sensitivity (100%, 95% CI = 68 to 100 for both). CONCLUSIONS: Gene probes upregulated in critically ill pediatric patients with septic shock may allow for the identification of novel candidate serum biomarkers for SSAKI prediction. |
format | Online Article Text |
id | pubmed-3388679 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2011 |
publisher | BioMed Central |
record_format | MEDLINE/PubMed |
spelling | pubmed-33886792012-07-04 Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray Basu, Rajit K Standage, Stephen W Cvijanovich, Natalie Z Allen, Geoffrey L Thomas, Neal J Freishtat, Robert J Anas, Nick Meyer, Keith Checchia, Paul A Lin, Richard Shanley, Thomas P Bigham, Michael T Wheeler, Derek S Devarajan, Prasad Goldstein, Stuart L Wong, Hector R Crit Care Research INTRODUCTION: Septic-shock-associated acute kidney injury (SSAKI) carries high morbidity in the pediatric population. Effective treatment strategies are lacking, in part due to poor detection and prediction. There is a need to identify novel candidate biomarkers of SSAKI. The objective of our study was to determine whether microarray data from children with septic shock could be used to derive a panel of candidate biomarkers for predicting SSAKI. METHODS: A retrospective cohort study compared microarray data representing the first 24 hours of admission for 179 children with septic shock with those of 53 age-matched normal controls. SSAKI was defined as a >200% increase of baseline serum creatinine, persistent to 7 days after admission. RESULTS: Patients with SSAKI (n = 31) and patients without SSAKI (n = 148) were clinically similar, but SSAKI carried a higher mortality (45% vs. 10%). Twenty-one unique gene probes were upregulated in SSAKI patients versus patients without SSAKI. Using leave-one-out cross-validation and class prediction modeling, these probes predicted SSAKI with a sensitivity of 98% (95% confidence interval (CI) = 81 to 100) and a specificity of 80% (95% CI = 72 to 86). Serum protein levels of two specific genes showed high sensitivity for predicting SSAKI: matrix metalloproteinase-8 (89%, 95% CI = 64 to 98) and elastase-2 (83%, 95% CI = 58 to 96). Both biomarkers carried a negative predictive value of 95%. When applied to a validation cohort, although both biomarkers carried low specificity (matrix metalloproteinase-8: 41%, 95% CI = 28 to 50; and elastase-2: 49%, 95% CI = 36 to 62), they carried high sensitivity (100%, 95% CI = 68 to 100 for both). CONCLUSIONS: Gene probes upregulated in critically ill pediatric patients with septic shock may allow for the identification of novel candidate serum biomarkers for SSAKI prediction. BioMed Central 2011 2011-11-18 /pmc/articles/PMC3388679/ /pubmed/22098946 http://dx.doi.org/10.1186/cc10554 Text en Copyright ©2011 Basu et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited. |
spellingShingle | Research Basu, Rajit K Standage, Stephen W Cvijanovich, Natalie Z Allen, Geoffrey L Thomas, Neal J Freishtat, Robert J Anas, Nick Meyer, Keith Checchia, Paul A Lin, Richard Shanley, Thomas P Bigham, Michael T Wheeler, Derek S Devarajan, Prasad Goldstein, Stuart L Wong, Hector R Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray |
title | Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray |
title_full | Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray |
title_fullStr | Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray |
title_full_unstemmed | Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray |
title_short | Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray |
title_sort | identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray |
topic | Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3388679/ https://www.ncbi.nlm.nih.gov/pubmed/22098946 http://dx.doi.org/10.1186/cc10554 |
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