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Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray

INTRODUCTION: Septic-shock-associated acute kidney injury (SSAKI) carries high morbidity in the pediatric population. Effective treatment strategies are lacking, in part due to poor detection and prediction. There is a need to identify novel candidate biomarkers of SSAKI. The objective of our study...

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Autores principales: Basu, Rajit K, Standage, Stephen W, Cvijanovich, Natalie Z, Allen, Geoffrey L, Thomas, Neal J, Freishtat, Robert J, Anas, Nick, Meyer, Keith, Checchia, Paul A, Lin, Richard, Shanley, Thomas P, Bigham, Michael T, Wheeler, Derek S, Devarajan, Prasad, Goldstein, Stuart L, Wong, Hector R
Formato: Online Artículo Texto
Lenguaje:English
Publicado: BioMed Central 2011
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3388679/
https://www.ncbi.nlm.nih.gov/pubmed/22098946
http://dx.doi.org/10.1186/cc10554
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author Basu, Rajit K
Standage, Stephen W
Cvijanovich, Natalie Z
Allen, Geoffrey L
Thomas, Neal J
Freishtat, Robert J
Anas, Nick
Meyer, Keith
Checchia, Paul A
Lin, Richard
Shanley, Thomas P
Bigham, Michael T
Wheeler, Derek S
Devarajan, Prasad
Goldstein, Stuart L
Wong, Hector R
author_facet Basu, Rajit K
Standage, Stephen W
Cvijanovich, Natalie Z
Allen, Geoffrey L
Thomas, Neal J
Freishtat, Robert J
Anas, Nick
Meyer, Keith
Checchia, Paul A
Lin, Richard
Shanley, Thomas P
Bigham, Michael T
Wheeler, Derek S
Devarajan, Prasad
Goldstein, Stuart L
Wong, Hector R
author_sort Basu, Rajit K
collection PubMed
description INTRODUCTION: Septic-shock-associated acute kidney injury (SSAKI) carries high morbidity in the pediatric population. Effective treatment strategies are lacking, in part due to poor detection and prediction. There is a need to identify novel candidate biomarkers of SSAKI. The objective of our study was to determine whether microarray data from children with septic shock could be used to derive a panel of candidate biomarkers for predicting SSAKI. METHODS: A retrospective cohort study compared microarray data representing the first 24 hours of admission for 179 children with septic shock with those of 53 age-matched normal controls. SSAKI was defined as a >200% increase of baseline serum creatinine, persistent to 7 days after admission. RESULTS: Patients with SSAKI (n = 31) and patients without SSAKI (n = 148) were clinically similar, but SSAKI carried a higher mortality (45% vs. 10%). Twenty-one unique gene probes were upregulated in SSAKI patients versus patients without SSAKI. Using leave-one-out cross-validation and class prediction modeling, these probes predicted SSAKI with a sensitivity of 98% (95% confidence interval (CI) = 81 to 100) and a specificity of 80% (95% CI = 72 to 86). Serum protein levels of two specific genes showed high sensitivity for predicting SSAKI: matrix metalloproteinase-8 (89%, 95% CI = 64 to 98) and elastase-2 (83%, 95% CI = 58 to 96). Both biomarkers carried a negative predictive value of 95%. When applied to a validation cohort, although both biomarkers carried low specificity (matrix metalloproteinase-8: 41%, 95% CI = 28 to 50; and elastase-2: 49%, 95% CI = 36 to 62), they carried high sensitivity (100%, 95% CI = 68 to 100 for both). CONCLUSIONS: Gene probes upregulated in critically ill pediatric patients with septic shock may allow for the identification of novel candidate serum biomarkers for SSAKI prediction.
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spelling pubmed-33886792012-07-04 Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray Basu, Rajit K Standage, Stephen W Cvijanovich, Natalie Z Allen, Geoffrey L Thomas, Neal J Freishtat, Robert J Anas, Nick Meyer, Keith Checchia, Paul A Lin, Richard Shanley, Thomas P Bigham, Michael T Wheeler, Derek S Devarajan, Prasad Goldstein, Stuart L Wong, Hector R Crit Care Research INTRODUCTION: Septic-shock-associated acute kidney injury (SSAKI) carries high morbidity in the pediatric population. Effective treatment strategies are lacking, in part due to poor detection and prediction. There is a need to identify novel candidate biomarkers of SSAKI. The objective of our study was to determine whether microarray data from children with septic shock could be used to derive a panel of candidate biomarkers for predicting SSAKI. METHODS: A retrospective cohort study compared microarray data representing the first 24 hours of admission for 179 children with septic shock with those of 53 age-matched normal controls. SSAKI was defined as a >200% increase of baseline serum creatinine, persistent to 7 days after admission. RESULTS: Patients with SSAKI (n = 31) and patients without SSAKI (n = 148) were clinically similar, but SSAKI carried a higher mortality (45% vs. 10%). Twenty-one unique gene probes were upregulated in SSAKI patients versus patients without SSAKI. Using leave-one-out cross-validation and class prediction modeling, these probes predicted SSAKI with a sensitivity of 98% (95% confidence interval (CI) = 81 to 100) and a specificity of 80% (95% CI = 72 to 86). Serum protein levels of two specific genes showed high sensitivity for predicting SSAKI: matrix metalloproteinase-8 (89%, 95% CI = 64 to 98) and elastase-2 (83%, 95% CI = 58 to 96). Both biomarkers carried a negative predictive value of 95%. When applied to a validation cohort, although both biomarkers carried low specificity (matrix metalloproteinase-8: 41%, 95% CI = 28 to 50; and elastase-2: 49%, 95% CI = 36 to 62), they carried high sensitivity (100%, 95% CI = 68 to 100 for both). CONCLUSIONS: Gene probes upregulated in critically ill pediatric patients with septic shock may allow for the identification of novel candidate serum biomarkers for SSAKI prediction. BioMed Central 2011 2011-11-18 /pmc/articles/PMC3388679/ /pubmed/22098946 http://dx.doi.org/10.1186/cc10554 Text en Copyright ©2011 Basu et al.; licensee BioMed Central Ltd. http://creativecommons.org/licenses/by/2.0 This is an open access article distributed under the terms of the Creative Commons Attribution License (http://creativecommons.org/licenses/by/2.0), which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.
spellingShingle Research
Basu, Rajit K
Standage, Stephen W
Cvijanovich, Natalie Z
Allen, Geoffrey L
Thomas, Neal J
Freishtat, Robert J
Anas, Nick
Meyer, Keith
Checchia, Paul A
Lin, Richard
Shanley, Thomas P
Bigham, Michael T
Wheeler, Derek S
Devarajan, Prasad
Goldstein, Stuart L
Wong, Hector R
Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray
title Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray
title_full Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray
title_fullStr Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray
title_full_unstemmed Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray
title_short Identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray
title_sort identification of candidate serum biomarkers for severe septic shock-associated kidney injury via microarray
topic Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3388679/
https://www.ncbi.nlm.nih.gov/pubmed/22098946
http://dx.doi.org/10.1186/cc10554
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