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Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta
Spirochaeta coccoides Dröge et al. 2006 is a member of the genus Spirochaeta Ehrenberg 1835, one of the oldest named genera within the Bacteria. S. coccoides is an obligately anaerobic, Gram-negative, non-motile, spherical bacterium that was isolated from the hindgut contents of the termite Neoterme...
Autores principales: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Michigan State University
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3388779/ https://www.ncbi.nlm.nih.gov/pubmed/22768363 http://dx.doi.org/10.4056/sigs.2796069 |
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author | Abt, Birte Han, Cliff Scheuner, Carmen Lu, Megan Lapidus, Alla Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Gronow, Sabine Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Detter, John C. |
author_facet | Abt, Birte Han, Cliff Scheuner, Carmen Lu, Megan Lapidus, Alla Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Gronow, Sabine Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Detter, John C. |
author_sort | Abt, Birte |
collection | PubMed |
description | Spirochaeta coccoides Dröge et al. 2006 is a member of the genus Spirochaeta Ehrenberg 1835, one of the oldest named genera within the Bacteria. S. coccoides is an obligately anaerobic, Gram-negative, non-motile, spherical bacterium that was isolated from the hindgut contents of the termite Neotermes castaneus. The species is of interest because it may play an important role in the digestion of breakdown products from cellulose and hemicellulose in the termite gut. Here we provide a taxonomic re-evaluation for strain SPN1(T), and based on physiological and genomic characteristics, we propose its reclassification as a novel species in the genus Sphaerochaeta, a recently published sister group of the Spirochaeta. The 2,227,296 bp long genome of strain SPN1(T) with its 1,866 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. |
format | Online Article Text |
id | pubmed-3388779 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Michigan State University |
record_format | MEDLINE/PubMed |
spelling | pubmed-33887792012-07-05 Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta Abt, Birte Han, Cliff Scheuner, Carmen Lu, Megan Lapidus, Alla Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Gronow, Sabine Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Detter, John C. Stand Genomic Sci Short Genome Reports Spirochaeta coccoides Dröge et al. 2006 is a member of the genus Spirochaeta Ehrenberg 1835, one of the oldest named genera within the Bacteria. S. coccoides is an obligately anaerobic, Gram-negative, non-motile, spherical bacterium that was isolated from the hindgut contents of the termite Neotermes castaneus. The species is of interest because it may play an important role in the digestion of breakdown products from cellulose and hemicellulose in the termite gut. Here we provide a taxonomic re-evaluation for strain SPN1(T), and based on physiological and genomic characteristics, we propose its reclassification as a novel species in the genus Sphaerochaeta, a recently published sister group of the Spirochaeta. The 2,227,296 bp long genome of strain SPN1(T) with its 1,866 protein-coding and 58 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project. Michigan State University 2012-05-04 /pmc/articles/PMC3388779/ /pubmed/22768363 http://dx.doi.org/10.4056/sigs.2796069 Text en |
spellingShingle | Short Genome Reports Abt, Birte Han, Cliff Scheuner, Carmen Lu, Megan Lapidus, Alla Nolan, Matt Lucas, Susan Hammon, Nancy Deshpande, Shweta Cheng, Jan-Fang Tapia, Roxanne Goodwin, Lynne A. Pitluck, Sam Liolios, Konstantinos Pagani, Ioanna Ivanova, Natalia Mavromatis, Konstantinos Mikhailova, Natalia Huntemann, Marcel Pati, Amrita Chen, Amy Palaniappan, Krishna Land, Miriam Hauser, Loren Brambilla, Evelyne-Marie Rohde, Manfred Spring, Stefan Gronow, Sabine Göker, Markus Woyke, Tanja Bristow, James Eisen, Jonathan A. Markowitz, Victor Hugenholtz, Philip Kyrpides, Nikos C. Klenk, Hans-Peter Detter, John C. Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta |
title | Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta |
title_full | Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta |
title_fullStr | Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta |
title_full_unstemmed | Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta |
title_short | Complete genome sequence of the termite hindgut bacterium Spirochaeta coccoides type strain (SPN1(T)), reclassification in the genus Sphaerochaeta as Sphaerochaeta coccoides comb. nov. and emendations of the family Spirochaetaceae and the genus Sphaerochaeta |
title_sort | complete genome sequence of the termite hindgut bacterium spirochaeta coccoides type strain (spn1(t)), reclassification in the genus sphaerochaeta as sphaerochaeta coccoides comb. nov. and emendations of the family spirochaetaceae and the genus sphaerochaeta |
topic | Short Genome Reports |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3388779/ https://www.ncbi.nlm.nih.gov/pubmed/22768363 http://dx.doi.org/10.4056/sigs.2796069 |
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completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta AT woyketanja completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta AT bristowjames completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta AT eisenjonathana completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta AT markowitzvictor completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta AT hugenholtzphilip completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta AT kyrpidesnikosc completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta AT klenkhanspeter completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta AT detterjohnc completegenomesequenceofthetermitehindgutbacteriumspirochaetacoccoidestypestrainspn1treclassificationinthegenussphaerochaetaassphaerochaetacoccoidescombnovandemendationsofthefamilyspirochaetaceaeandthegenussphaerochaeta |