Cargando…

regSNPs: a strategy for prioritizing regulatory single nucleotide substitutions

Motivation: One of the fundamental questions in genetics study is to identify functional DNA variants that are responsible to a disease or phenotype of interest. Results from large-scale genetics studies, such as genome-wide association studies (GWAS), and the availability of high-throughput sequenc...

Descripción completa

Detalles Bibliográficos
Autores principales:	Teng, Mingxiang, Ichikawa, Shoji, Padgett, Leah R., Wang, Yadong, Mort, Matthew, Cooper, David N., Koller, Daniel L., Foroud, Tatiana, Edenberg, Howard J., Econs, Michael J., Liu, Yunlong
Formato:	Online Artículo Texto
Lenguaje:	English
Publicado:	Oxford University Press 2012
Materias:	Original Papers
Acceso en línea:	https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3389767/ https://www.ncbi.nlm.nih.gov/pubmed/22611130 http://dx.doi.org/10.1093/bioinformatics/bts275

Ejemplares similares

regSNPs-splicing: a tool for prioritizing synonymous single-nucleotide substitution
por: Zhang, Xinjun, et al.
Publicado: (2017)

RegSNPs-intron: a computational framework for predicting pathogenic impact of intronic single nucleotide variants
por: Lin, Hai, et al.
Publicado: (2019)

regSNPs-ASB: A Computational Framework for Identifying Allele-Specific Transcription Factor Binding From ATAC-seq Data
por: Xu, Siwen, et al.
Publicado: (2020)

Prioritizing single-nucleotide variations that potentially regulate alternative splicing
por: Teng, Mingxiang, et al.
Publicado: (2011)

Replication of Previous Genome-wide Association Studies of Bone Mineral Density in Premenopausal American Women
por: Ichikawa, Shoji, et al.
Publicado: (2010)

Prioritization of disease microRNAs through a human phenome-microRNAome network
por: Jiang, Qinghua, et al.
Publicado: (2010)

RegVar: Tissue-specific Prioritization of Non-coding Regulatory Variants
por: Lu, Hao, et al.
Publicado: (2023)

agReg-SNPdb: A Database of Regulatory SNPs for Agricultural Animal Species
por: Klees, Selina, et al.
Publicado: (2021)

Prioritization of Osteoporosis‐Associated Genome‐wide Association Study (GWAS) Single‐Nucleotide Polymorphisms (SNPs) Using Epigenomics and Transcriptomics
por: Zhang, Xiao, et al.
Publicado: (2021)

agReg-SNPdb-Plants: A Database of Regulatory SNPs for Agricultural Plant Species
por: Klees, Selina, et al.
Publicado: (2022)

A Latent Model for Prioritization of SNPs for Functional Studies
por: Fridley, Brooke L., et al.
Publicado: (2011)

Standard linkage and association methods identify the mechanism of four susceptibility genes for a simulated complex disease
por: Pankratz, Nathan, et al.
Publicado: (2005)

Genetic Research: Who Is At Risk for Alcoholism?
por: Foroud, Tatiana, et al.
Publicado: (2010)

High density marker panels, SNPs prioritizing and accuracy of genomic selection
por: Chang, Ling-Yun, et al.
Publicado: (2018)

Comprehensive functional annotation of susceptibility SNPs prioritized 10 genes for schizophrenia
por: Niu, Hui-Min, et al.
Publicado: (2019)

Epigenomic and Transcriptomic Prioritization of Candidate Obesity-Risk Regulatory GWAS SNPs
por: Zhang, Xiao, et al.
Publicado: (2022)

Evaluation of the tool “Reg Refine” for user‐guided deformable image registration
por: Johnson, Perry B., et al.
Publicado: (2016)

Identification of Genes Influencing Skeletal Phenotypes in Congenic P/NP Rats
por: Alam, Imranul, et al.
Publicado: (2010)

Correction to: High density marker panels, SNPs prioritizing and accuracy of genomic selection
por: Chang, Ling-Yun, et al.
Publicado: (2018)

Statistical modeling for sensitive detection of low-frequency single nucleotide variants
por: Hao, Yangyang, et al.
Publicado: (2016)

Comparison of microsatellites, single-nucleotide polymorphisms (SNPs) and composite markers derived from SNPs in linkage analysis
por: Xing, Chao, et al.
Publicado: (2005)

RNA alternative splicing impacts the risk for alcohol use disorder
por: Li, Rudong, et al.
Publicado: (2023)

regQTLs: Single nucleotide polymorphisms that modulate microRNA regulation of gene expression in tumors
por: Wilk, Gary, et al.
Publicado: (2018)

Genome-wide association study of stimulant dependence
por: Cox, Jiayi, et al.
Publicado: (2021)

38766 Massively Parallel Reporter Assay Reveals Functional Impact of 3™-UTR SNPs Associated with Neurological and Psychiatric Disorders
por: Chen, Andy B., et al.
Publicado: (2021)

Prioritizing single-nucleotide polymorphisms and variants associated with clinical mastitis
por: Suravajhala, Prashanth, et al.
Publicado: (2017)

Candidate Genes and Single Nucleotide Polymorphisms (SNPs) in the Study of Human Disease
por: Chanock, Stephen
Publicado: (2001)

Impact of Single Nucleotide Polymorphisms (SNPs) on Immunosuppressive Therapy in Lung Transplantation
por: Ruiz, Jesus, et al.
Publicado: (2015)

Associations of SNPs located at candidate genes to bovine growth traits, prioritized with an interaction networks construction approach
por: Paredes-Sánchez, Francisco Alejandro, et al.
Publicado: (2015)

Controversial Canadian regs.
por: Fields, S
Publicado: (2001)

The mark of T reg cells
por: Van Epps, Heather L.
Publicado: (2005)

New target for T regs
por: Van Epps, Heather L.
Publicado: (2005)

Genome-Wide Searching Single Nucleotide-Polymorphisms (SNPs) and SNPs-Targeting a Multiplex Primer for Identification of Common Salmonella Serotypes
por: Rahman, Md-Mafizur, et al.
Publicado: (2022)

Mutation Rate Distribution Inferred from Coincident SNPs and Coincident Substitutions
por: Johnson, Philip L. F., et al.
Publicado: (2011)

Understanding the Effects of Prenatal Alcohol Exposure Using Three Dimensional Facial Imaging
por: Wetherill, Leah, et al.
Publicado: (2011)

SNPLogic: an interactive single nucleotide polymorphism selection, annotation, and prioritization system
por: Pico, Alexander R., et al.
Publicado: (2009)

Single nucleotide polymorphisms (SNPs) are inherited from parents and they measure heritable events
por: Hemminki, Kari, et al.
Publicado: (2005)

In Silico Analysis of Single Nucleotide Polymorphism (SNPs) in Human β-Globin Gene
por: Alanazi, Mohammed, et al.
Publicado: (2011)

TLR4 single nucleotide polymorphisms (SNPs) associated with Salmonella shedding in pigs
por: Kich, Jalusa Deon, et al.
Publicado: (2014)

In silico analysis of single nucleotide polymorphisms (SNPs) in human FOXC2 gene
por: Nimir, Mohammed, et al.
Publicado: (2017)

Cannot write session to /tmp/vufind_sessions/sess_ugtord4vjlnekq06ev1e1rai0o