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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
The Integrated Microbial Genomes and Metagenomes (IMG/M) resource is a data management system that supports the analysis of sequence data from microbial communities in the integrated context of all publicly available draft and complete genomes from the three domains of life as well as a large number...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3390314/ https://www.ncbi.nlm.nih.gov/pubmed/22792232 http://dx.doi.org/10.1371/journal.pone.0040151 |
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author | Markowitz, Victor M. Chen, I-Min A. Chu, Ken Szeto, Ernest Palaniappan, Krishna Jacob, Biju Ratner, Anna Liolios, Konstantinos Pagani, Ioanna Huntemann, Marcel Mavromatis, Konstantinos Ivanova, Natalia N. Kyrpides, Nikos C. |
author_facet | Markowitz, Victor M. Chen, I-Min A. Chu, Ken Szeto, Ernest Palaniappan, Krishna Jacob, Biju Ratner, Anna Liolios, Konstantinos Pagani, Ioanna Huntemann, Marcel Mavromatis, Konstantinos Ivanova, Natalia N. Kyrpides, Nikos C. |
author_sort | Markowitz, Victor M. |
collection | PubMed |
description | The Integrated Microbial Genomes and Metagenomes (IMG/M) resource is a data management system that supports the analysis of sequence data from microbial communities in the integrated context of all publicly available draft and complete genomes from the three domains of life as well as a large number of plasmids and viruses. IMG/M currently contains thousands of genomes and metagenome samples with billions of genes. IMG/M-HMP is an IMG/M data mart serving the US National Institutes of Health (NIH) Human Microbiome Project (HMP), focussed on HMP generated metagenome datasets, and is one of the central resources provided from the HMP Data Analysis and Coordination Center (DACC). IMG/M-HMP is available at http://www.hmpdacc-resources.org/imgm_hmp/. |
format | Online Article Text |
id | pubmed-3390314 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-33903142012-07-12 IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project Markowitz, Victor M. Chen, I-Min A. Chu, Ken Szeto, Ernest Palaniappan, Krishna Jacob, Biju Ratner, Anna Liolios, Konstantinos Pagani, Ioanna Huntemann, Marcel Mavromatis, Konstantinos Ivanova, Natalia N. Kyrpides, Nikos C. PLoS One Research Article The Integrated Microbial Genomes and Metagenomes (IMG/M) resource is a data management system that supports the analysis of sequence data from microbial communities in the integrated context of all publicly available draft and complete genomes from the three domains of life as well as a large number of plasmids and viruses. IMG/M currently contains thousands of genomes and metagenome samples with billions of genes. IMG/M-HMP is an IMG/M data mart serving the US National Institutes of Health (NIH) Human Microbiome Project (HMP), focussed on HMP generated metagenome datasets, and is one of the central resources provided from the HMP Data Analysis and Coordination Center (DACC). IMG/M-HMP is available at http://www.hmpdacc-resources.org/imgm_hmp/. Public Library of Science 2012-07-05 /pmc/articles/PMC3390314/ /pubmed/22792232 http://dx.doi.org/10.1371/journal.pone.0040151 Text en Markowitz et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Markowitz, Victor M. Chen, I-Min A. Chu, Ken Szeto, Ernest Palaniappan, Krishna Jacob, Biju Ratner, Anna Liolios, Konstantinos Pagani, Ioanna Huntemann, Marcel Mavromatis, Konstantinos Ivanova, Natalia N. Kyrpides, Nikos C. IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project |
title | IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project |
title_full | IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project |
title_fullStr | IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project |
title_full_unstemmed | IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project |
title_short | IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project |
title_sort | img/m-hmp: a metagenome comparative analysis system for the human microbiome project |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3390314/ https://www.ncbi.nlm.nih.gov/pubmed/22792232 http://dx.doi.org/10.1371/journal.pone.0040151 |
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