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IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project

The Integrated Microbial Genomes and Metagenomes (IMG/M) resource is a data management system that supports the analysis of sequence data from microbial communities in the integrated context of all publicly available draft and complete genomes from the three domains of life as well as a large number...

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Autores principales: Markowitz, Victor M., Chen, I-Min A., Chu, Ken, Szeto, Ernest, Palaniappan, Krishna, Jacob, Biju, Ratner, Anna, Liolios, Konstantinos, Pagani, Ioanna, Huntemann, Marcel, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3390314/
https://www.ncbi.nlm.nih.gov/pubmed/22792232
http://dx.doi.org/10.1371/journal.pone.0040151
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author Markowitz, Victor M.
Chen, I-Min A.
Chu, Ken
Szeto, Ernest
Palaniappan, Krishna
Jacob, Biju
Ratner, Anna
Liolios, Konstantinos
Pagani, Ioanna
Huntemann, Marcel
Mavromatis, Konstantinos
Ivanova, Natalia N.
Kyrpides, Nikos C.
author_facet Markowitz, Victor M.
Chen, I-Min A.
Chu, Ken
Szeto, Ernest
Palaniappan, Krishna
Jacob, Biju
Ratner, Anna
Liolios, Konstantinos
Pagani, Ioanna
Huntemann, Marcel
Mavromatis, Konstantinos
Ivanova, Natalia N.
Kyrpides, Nikos C.
author_sort Markowitz, Victor M.
collection PubMed
description The Integrated Microbial Genomes and Metagenomes (IMG/M) resource is a data management system that supports the analysis of sequence data from microbial communities in the integrated context of all publicly available draft and complete genomes from the three domains of life as well as a large number of plasmids and viruses. IMG/M currently contains thousands of genomes and metagenome samples with billions of genes. IMG/M-HMP is an IMG/M data mart serving the US National Institutes of Health (NIH) Human Microbiome Project (HMP), focussed on HMP generated metagenome datasets, and is one of the central resources provided from the HMP Data Analysis and Coordination Center (DACC). IMG/M-HMP is available at http://www.hmpdacc-resources.org/imgm_hmp/.
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spelling pubmed-33903142012-07-12 IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project Markowitz, Victor M. Chen, I-Min A. Chu, Ken Szeto, Ernest Palaniappan, Krishna Jacob, Biju Ratner, Anna Liolios, Konstantinos Pagani, Ioanna Huntemann, Marcel Mavromatis, Konstantinos Ivanova, Natalia N. Kyrpides, Nikos C. PLoS One Research Article The Integrated Microbial Genomes and Metagenomes (IMG/M) resource is a data management system that supports the analysis of sequence data from microbial communities in the integrated context of all publicly available draft and complete genomes from the three domains of life as well as a large number of plasmids and viruses. IMG/M currently contains thousands of genomes and metagenome samples with billions of genes. IMG/M-HMP is an IMG/M data mart serving the US National Institutes of Health (NIH) Human Microbiome Project (HMP), focussed on HMP generated metagenome datasets, and is one of the central resources provided from the HMP Data Analysis and Coordination Center (DACC). IMG/M-HMP is available at http://www.hmpdacc-resources.org/imgm_hmp/. Public Library of Science 2012-07-05 /pmc/articles/PMC3390314/ /pubmed/22792232 http://dx.doi.org/10.1371/journal.pone.0040151 Text en Markowitz et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
Markowitz, Victor M.
Chen, I-Min A.
Chu, Ken
Szeto, Ernest
Palaniappan, Krishna
Jacob, Biju
Ratner, Anna
Liolios, Konstantinos
Pagani, Ioanna
Huntemann, Marcel
Mavromatis, Konstantinos
Ivanova, Natalia N.
Kyrpides, Nikos C.
IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
title IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
title_full IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
title_fullStr IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
title_full_unstemmed IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
title_short IMG/M-HMP: A Metagenome Comparative Analysis System for the Human Microbiome Project
title_sort img/m-hmp: a metagenome comparative analysis system for the human microbiome project
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3390314/
https://www.ncbi.nlm.nih.gov/pubmed/22792232
http://dx.doi.org/10.1371/journal.pone.0040151
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