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HLA Associations in Classical Hodgkin Lymphoma: EBV Status Matters
The pathogenesis of classical Hodgkin lymphoma (cHL) involves environmental and genetic factors. To explore the role of the human leukocyte antigen (HLA) genes, we performed a case-control genotyping study in 338 Dutch cHL patients using a PCR-based sequence-specific oligonucleotide probe (SSOP) hyb...
Autores principales: | , , , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3393726/ https://www.ncbi.nlm.nih.gov/pubmed/22808081 http://dx.doi.org/10.1371/journal.pone.0039986 |
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author | Huang, Xin Kushekhar, Kushi Nolte, Ilja Kooistra, Wierd Visser, Lydia Bouwman, Ilby Kouprie, Niels Veenstra, Rianne van Imhoff, Gustaaf Olver, Bianca Houlston, Richard S. Poppema, Sibrand Diepstra, Arjan Hepkema, Bouke van den Berg, Anke |
author_facet | Huang, Xin Kushekhar, Kushi Nolte, Ilja Kooistra, Wierd Visser, Lydia Bouwman, Ilby Kouprie, Niels Veenstra, Rianne van Imhoff, Gustaaf Olver, Bianca Houlston, Richard S. Poppema, Sibrand Diepstra, Arjan Hepkema, Bouke van den Berg, Anke |
author_sort | Huang, Xin |
collection | PubMed |
description | The pathogenesis of classical Hodgkin lymphoma (cHL) involves environmental and genetic factors. To explore the role of the human leukocyte antigen (HLA) genes, we performed a case-control genotyping study in 338 Dutch cHL patients using a PCR-based sequence-specific oligonucleotide probe (SSOP) hybridization approach. The allele frequencies were compared to HLA typings of more than 6,000 controls. The age of the cHL patients varied between 13 and 81 years with a median of 35 years. Nodular sclerosis subtype was the most common subtype (87%) and EBV was detected in 25% of the cHL patients. HLA-B5 was significantly increased and HLA-DR7 significantly decreased in the total cHL patient population as compared to controls. Two class II associations were observed to be specific for the EBV− cHL population with an increase of HLA-DR2 and HLA-DR5. Allele frequencies of HLA-A1, HLA-B37 and HLA-DR10 were significantly increased in the EBV+ cHL population; these alleles are in strong linkage disequilibrium and form a common haplotype in Caucasians. The allele frequency of HLA-A2 was significantly decreased in the EBV+ cHL population. Analysis of haplotypes with a frequency of >1% revealed a significant increase of HLA-A2-B7-DR2 in EBV− cHL as compared to controls. SSOP association analysis revealed significant differences between EBV+ and EBV− cHL patients for 19 probes that discriminate between HLA-A*01 and HLA-A*02. In conclusion, the HLA-A1 and HLA-A2 antigens and not specific single nucleotide variants shared by multiple alleles are responsible for the association with EBV+ cHL. Furthermore several new protective and predisposing HLA class I and II associations for the EBV+, the EBV− and the entire cHL population were identified. |
format | Online Article Text |
id | pubmed-3393726 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-33937262012-07-17 HLA Associations in Classical Hodgkin Lymphoma: EBV Status Matters Huang, Xin Kushekhar, Kushi Nolte, Ilja Kooistra, Wierd Visser, Lydia Bouwman, Ilby Kouprie, Niels Veenstra, Rianne van Imhoff, Gustaaf Olver, Bianca Houlston, Richard S. Poppema, Sibrand Diepstra, Arjan Hepkema, Bouke van den Berg, Anke PLoS One Research Article The pathogenesis of classical Hodgkin lymphoma (cHL) involves environmental and genetic factors. To explore the role of the human leukocyte antigen (HLA) genes, we performed a case-control genotyping study in 338 Dutch cHL patients using a PCR-based sequence-specific oligonucleotide probe (SSOP) hybridization approach. The allele frequencies were compared to HLA typings of more than 6,000 controls. The age of the cHL patients varied between 13 and 81 years with a median of 35 years. Nodular sclerosis subtype was the most common subtype (87%) and EBV was detected in 25% of the cHL patients. HLA-B5 was significantly increased and HLA-DR7 significantly decreased in the total cHL patient population as compared to controls. Two class II associations were observed to be specific for the EBV− cHL population with an increase of HLA-DR2 and HLA-DR5. Allele frequencies of HLA-A1, HLA-B37 and HLA-DR10 were significantly increased in the EBV+ cHL population; these alleles are in strong linkage disequilibrium and form a common haplotype in Caucasians. The allele frequency of HLA-A2 was significantly decreased in the EBV+ cHL population. Analysis of haplotypes with a frequency of >1% revealed a significant increase of HLA-A2-B7-DR2 in EBV− cHL as compared to controls. SSOP association analysis revealed significant differences between EBV+ and EBV− cHL patients for 19 probes that discriminate between HLA-A*01 and HLA-A*02. In conclusion, the HLA-A1 and HLA-A2 antigens and not specific single nucleotide variants shared by multiple alleles are responsible for the association with EBV+ cHL. Furthermore several new protective and predisposing HLA class I and II associations for the EBV+, the EBV− and the entire cHL population were identified. Public Library of Science 2012-07-10 /pmc/articles/PMC3393726/ /pubmed/22808081 http://dx.doi.org/10.1371/journal.pone.0039986 Text en Huang et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Huang, Xin Kushekhar, Kushi Nolte, Ilja Kooistra, Wierd Visser, Lydia Bouwman, Ilby Kouprie, Niels Veenstra, Rianne van Imhoff, Gustaaf Olver, Bianca Houlston, Richard S. Poppema, Sibrand Diepstra, Arjan Hepkema, Bouke van den Berg, Anke HLA Associations in Classical Hodgkin Lymphoma: EBV Status Matters |
title | HLA Associations in Classical Hodgkin Lymphoma: EBV Status Matters |
title_full | HLA Associations in Classical Hodgkin Lymphoma: EBV Status Matters |
title_fullStr | HLA Associations in Classical Hodgkin Lymphoma: EBV Status Matters |
title_full_unstemmed | HLA Associations in Classical Hodgkin Lymphoma: EBV Status Matters |
title_short | HLA Associations in Classical Hodgkin Lymphoma: EBV Status Matters |
title_sort | hla associations in classical hodgkin lymphoma: ebv status matters |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3393726/ https://www.ncbi.nlm.nih.gov/pubmed/22808081 http://dx.doi.org/10.1371/journal.pone.0039986 |
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