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A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer
BACKGROUND: To improve the quality of life of colorectal cancer patients, it is important to establish new screening methods for early diagnosis of colorectal cancer. METHODOLOGY/PRINCIPAL FINDINGS: We performed serum metabolome analysis using gas-chromatography/mass-spectrometry (GC/MS). First, the...
Autores principales: | , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394708/ https://www.ncbi.nlm.nih.gov/pubmed/22792336 http://dx.doi.org/10.1371/journal.pone.0040459 |
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author | Nishiumi, Shin Kobayashi, Takashi Ikeda, Atsuki Yoshie, Tomoo Kibi, Megumi Izumi, Yoshihiro Okuno, Tatsuya Hayashi, Nobuhide Kawano, Seiji Takenawa, Tadaomi Azuma, Takeshi Yoshida, Masaru |
author_facet | Nishiumi, Shin Kobayashi, Takashi Ikeda, Atsuki Yoshie, Tomoo Kibi, Megumi Izumi, Yoshihiro Okuno, Tatsuya Hayashi, Nobuhide Kawano, Seiji Takenawa, Tadaomi Azuma, Takeshi Yoshida, Masaru |
author_sort | Nishiumi, Shin |
collection | PubMed |
description | BACKGROUND: To improve the quality of life of colorectal cancer patients, it is important to establish new screening methods for early diagnosis of colorectal cancer. METHODOLOGY/PRINCIPAL FINDINGS: We performed serum metabolome analysis using gas-chromatography/mass-spectrometry (GC/MS). First, the accuracy of our GC/MS-based serum metabolomic analytical method was evaluated by calculating the RSD% values of serum levels of various metabolites. Second, the intra-day (morning, daytime, and night) and inter-day (among 3 days) variances of serum metabolite levels were examined. Then, serum metabolite levels were compared between colorectal cancer patients (N = 60; N = 12 for each stage from 0 to 4) and age- and sex-matched healthy volunteers (N = 60) as a training set. The metabolites whose levels displayed significant changes were subjected to multiple logistic regression analysis using the stepwise variable selection method, and a colorectal cancer prediction model was established. The prediction model was composed of 2-hydroxybutyrate, aspartic acid, kynurenine, and cystamine, and its AUC, sensitivity, specificity, and accuracy were 0.9097, 85.0%, 85.0%, and 85.0%, respectively, according to the training set data. In contrast, the sensitivity, specificity, and accuracy of CEA were 35.0%, 96.7%, and 65.8%, respectively, and those of CA19-9 were 16.7%, 100%, and 58.3%, respectively. The validity of the prediction model was confirmed using colorectal cancer patients (N = 59) and healthy volunteers (N = 63) as a validation set. At the validation set, the sensitivity, specificity, and accuracy of the prediction model were 83.1%, 81.0%, and 82.0%, respectively, and these values were almost the same as those obtained with the training set. In addition, the model displayed high sensitivity for detecting stage 0–2 colorectal cancer (82.8%). CONCLUSIONS/SIGNIFICANCE: Our prediction model established via GC/MS-based serum metabolomic analysis is valuable for early detection of colorectal cancer and has the potential to become a novel screening test for colorectal cancer. |
format | Online Article Text |
id | pubmed-3394708 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-33947082012-07-12 A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer Nishiumi, Shin Kobayashi, Takashi Ikeda, Atsuki Yoshie, Tomoo Kibi, Megumi Izumi, Yoshihiro Okuno, Tatsuya Hayashi, Nobuhide Kawano, Seiji Takenawa, Tadaomi Azuma, Takeshi Yoshida, Masaru PLoS One Research Article BACKGROUND: To improve the quality of life of colorectal cancer patients, it is important to establish new screening methods for early diagnosis of colorectal cancer. METHODOLOGY/PRINCIPAL FINDINGS: We performed serum metabolome analysis using gas-chromatography/mass-spectrometry (GC/MS). First, the accuracy of our GC/MS-based serum metabolomic analytical method was evaluated by calculating the RSD% values of serum levels of various metabolites. Second, the intra-day (morning, daytime, and night) and inter-day (among 3 days) variances of serum metabolite levels were examined. Then, serum metabolite levels were compared between colorectal cancer patients (N = 60; N = 12 for each stage from 0 to 4) and age- and sex-matched healthy volunteers (N = 60) as a training set. The metabolites whose levels displayed significant changes were subjected to multiple logistic regression analysis using the stepwise variable selection method, and a colorectal cancer prediction model was established. The prediction model was composed of 2-hydroxybutyrate, aspartic acid, kynurenine, and cystamine, and its AUC, sensitivity, specificity, and accuracy were 0.9097, 85.0%, 85.0%, and 85.0%, respectively, according to the training set data. In contrast, the sensitivity, specificity, and accuracy of CEA were 35.0%, 96.7%, and 65.8%, respectively, and those of CA19-9 were 16.7%, 100%, and 58.3%, respectively. The validity of the prediction model was confirmed using colorectal cancer patients (N = 59) and healthy volunteers (N = 63) as a validation set. At the validation set, the sensitivity, specificity, and accuracy of the prediction model were 83.1%, 81.0%, and 82.0%, respectively, and these values were almost the same as those obtained with the training set. In addition, the model displayed high sensitivity for detecting stage 0–2 colorectal cancer (82.8%). CONCLUSIONS/SIGNIFICANCE: Our prediction model established via GC/MS-based serum metabolomic analysis is valuable for early detection of colorectal cancer and has the potential to become a novel screening test for colorectal cancer. Public Library of Science 2012-07-11 /pmc/articles/PMC3394708/ /pubmed/22792336 http://dx.doi.org/10.1371/journal.pone.0040459 Text en Nishiumi et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article Nishiumi, Shin Kobayashi, Takashi Ikeda, Atsuki Yoshie, Tomoo Kibi, Megumi Izumi, Yoshihiro Okuno, Tatsuya Hayashi, Nobuhide Kawano, Seiji Takenawa, Tadaomi Azuma, Takeshi Yoshida, Masaru A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer |
title | A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer |
title_full | A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer |
title_fullStr | A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer |
title_full_unstemmed | A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer |
title_short | A Novel Serum Metabolomics-Based Diagnostic Approach for Colorectal Cancer |
title_sort | novel serum metabolomics-based diagnostic approach for colorectal cancer |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3394708/ https://www.ncbi.nlm.nih.gov/pubmed/22792336 http://dx.doi.org/10.1371/journal.pone.0040459 |
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