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Adaptive Temperature Compensation in Circadian Oscillations
A temperature independent period and temperature entrainment are two defining features of circadian oscillators. A default model of distributed temperature compensation satisfies these basic facts yet is not easily reconciled with other properties of circadian clocks, such as many mutants with alter...
Autores principales: | , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3395600/ https://www.ncbi.nlm.nih.gov/pubmed/22807663 http://dx.doi.org/10.1371/journal.pcbi.1002585 |
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author | François, Paul Despierre, Nicolas Siggia, Eric D. |
author_facet | François, Paul Despierre, Nicolas Siggia, Eric D. |
author_sort | François, Paul |
collection | PubMed |
description | A temperature independent period and temperature entrainment are two defining features of circadian oscillators. A default model of distributed temperature compensation satisfies these basic facts yet is not easily reconciled with other properties of circadian clocks, such as many mutants with altered but temperature compensated periods. The default model also suggests that the shape of the circadian limit cycle and the associated phase response curves (PRC) will vary since the average concentrations of clock proteins change with temperature. We propose an alternative class of models where the twin properties of a fixed period and entrainment are structural and arise from an underlying adaptive system that buffers temperature changes. These models are distinguished by a PRC whose shape is temperature independent and orbits whose extrema are temperature independent. They are readily evolved by local, hill climbing, optimization of gene networks for a common quality measure of biological clocks, phase anticipation. Interestingly a standard realization of the Goodwin model for temperature compensation displays properties of adaptive rather than distributed temperature compensation. |
format | Online Article Text |
id | pubmed-3395600 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-33956002012-07-17 Adaptive Temperature Compensation in Circadian Oscillations François, Paul Despierre, Nicolas Siggia, Eric D. PLoS Comput Biol Research Article A temperature independent period and temperature entrainment are two defining features of circadian oscillators. A default model of distributed temperature compensation satisfies these basic facts yet is not easily reconciled with other properties of circadian clocks, such as many mutants with altered but temperature compensated periods. The default model also suggests that the shape of the circadian limit cycle and the associated phase response curves (PRC) will vary since the average concentrations of clock proteins change with temperature. We propose an alternative class of models where the twin properties of a fixed period and entrainment are structural and arise from an underlying adaptive system that buffers temperature changes. These models are distinguished by a PRC whose shape is temperature independent and orbits whose extrema are temperature independent. They are readily evolved by local, hill climbing, optimization of gene networks for a common quality measure of biological clocks, phase anticipation. Interestingly a standard realization of the Goodwin model for temperature compensation displays properties of adaptive rather than distributed temperature compensation. Public Library of Science 2012-07-12 /pmc/articles/PMC3395600/ /pubmed/22807663 http://dx.doi.org/10.1371/journal.pcbi.1002585 Text en Francois et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article François, Paul Despierre, Nicolas Siggia, Eric D. Adaptive Temperature Compensation in Circadian Oscillations |
title | Adaptive Temperature Compensation in Circadian Oscillations |
title_full | Adaptive Temperature Compensation in Circadian Oscillations |
title_fullStr | Adaptive Temperature Compensation in Circadian Oscillations |
title_full_unstemmed | Adaptive Temperature Compensation in Circadian Oscillations |
title_short | Adaptive Temperature Compensation in Circadian Oscillations |
title_sort | adaptive temperature compensation in circadian oscillations |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3395600/ https://www.ncbi.nlm.nih.gov/pubmed/22807663 http://dx.doi.org/10.1371/journal.pcbi.1002585 |
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