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Adaptive Temperature Compensation in Circadian Oscillations

A temperature independent period and temperature entrainment are two defining features of circadian oscillators. A default model of distributed temperature compensation satisfies these basic facts yet is not easily reconciled with other properties of circadian clocks, such as many mutants with alter...

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Detalles Bibliográficos
Autores principales: François, Paul, Despierre, Nicolas, Siggia, Eric D.
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3395600/
https://www.ncbi.nlm.nih.gov/pubmed/22807663
http://dx.doi.org/10.1371/journal.pcbi.1002585
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author François, Paul
Despierre, Nicolas
Siggia, Eric D.
author_facet François, Paul
Despierre, Nicolas
Siggia, Eric D.
author_sort François, Paul
collection PubMed
description A temperature independent period and temperature entrainment are two defining features of circadian oscillators. A default model of distributed temperature compensation satisfies these basic facts yet is not easily reconciled with other properties of circadian clocks, such as many mutants with altered but temperature compensated periods. The default model also suggests that the shape of the circadian limit cycle and the associated phase response curves (PRC) will vary since the average concentrations of clock proteins change with temperature. We propose an alternative class of models where the twin properties of a fixed period and entrainment are structural and arise from an underlying adaptive system that buffers temperature changes. These models are distinguished by a PRC whose shape is temperature independent and orbits whose extrema are temperature independent. They are readily evolved by local, hill climbing, optimization of gene networks for a common quality measure of biological clocks, phase anticipation. Interestingly a standard realization of the Goodwin model for temperature compensation displays properties of adaptive rather than distributed temperature compensation.
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spelling pubmed-33956002012-07-17 Adaptive Temperature Compensation in Circadian Oscillations François, Paul Despierre, Nicolas Siggia, Eric D. PLoS Comput Biol Research Article A temperature independent period and temperature entrainment are two defining features of circadian oscillators. A default model of distributed temperature compensation satisfies these basic facts yet is not easily reconciled with other properties of circadian clocks, such as many mutants with altered but temperature compensated periods. The default model also suggests that the shape of the circadian limit cycle and the associated phase response curves (PRC) will vary since the average concentrations of clock proteins change with temperature. We propose an alternative class of models where the twin properties of a fixed period and entrainment are structural and arise from an underlying adaptive system that buffers temperature changes. These models are distinguished by a PRC whose shape is temperature independent and orbits whose extrema are temperature independent. They are readily evolved by local, hill climbing, optimization of gene networks for a common quality measure of biological clocks, phase anticipation. Interestingly a standard realization of the Goodwin model for temperature compensation displays properties of adaptive rather than distributed temperature compensation. Public Library of Science 2012-07-12 /pmc/articles/PMC3395600/ /pubmed/22807663 http://dx.doi.org/10.1371/journal.pcbi.1002585 Text en Francois et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
François, Paul
Despierre, Nicolas
Siggia, Eric D.
Adaptive Temperature Compensation in Circadian Oscillations
title Adaptive Temperature Compensation in Circadian Oscillations
title_full Adaptive Temperature Compensation in Circadian Oscillations
title_fullStr Adaptive Temperature Compensation in Circadian Oscillations
title_full_unstemmed Adaptive Temperature Compensation in Circadian Oscillations
title_short Adaptive Temperature Compensation in Circadian Oscillations
title_sort adaptive temperature compensation in circadian oscillations
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3395600/
https://www.ncbi.nlm.nih.gov/pubmed/22807663
http://dx.doi.org/10.1371/journal.pcbi.1002585
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