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Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges

Genomic mining revealed one major nonribosomal peptide synthetase (NRPS) phylogenetic cluster in 12 marine sponge species, one ascidian, an actinobacterial isolate and seawater. Phylogenetic analysis predicts its taxonomic affiliation to the actinomycetes and hydroxy-phenyl-glycine as a likely subst...

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Autores principales: Pimentel-Elardo, Sheila Marie, Grozdanov, Lubomir, Proksch, Sebastian, Hentschel, Ute
Formato: Online Artículo Texto
Lenguaje:English
Publicado: MDPI 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397433/
https://www.ncbi.nlm.nih.gov/pubmed/22822366
http://dx.doi.org/10.3390/md10061192
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author Pimentel-Elardo, Sheila Marie
Grozdanov, Lubomir
Proksch, Sebastian
Hentschel, Ute
author_facet Pimentel-Elardo, Sheila Marie
Grozdanov, Lubomir
Proksch, Sebastian
Hentschel, Ute
author_sort Pimentel-Elardo, Sheila Marie
collection PubMed
description Genomic mining revealed one major nonribosomal peptide synthetase (NRPS) phylogenetic cluster in 12 marine sponge species, one ascidian, an actinobacterial isolate and seawater. Phylogenetic analysis predicts its taxonomic affiliation to the actinomycetes and hydroxy-phenyl-glycine as a likely substrate. Additionally, a phylogenetically distinct NRPS gene cluster was discovered in the microbial metagenome of the sponge Aplysina aerophoba, which shows highest similarities to NRPS genes that were previously assigned, by ways of single cell genomics, to a Chloroflexi sponge symbiont. Genomic mining studies such as the one presented here for NRPS genes, contribute to on-going efforts to characterize the genomic potential of sponge-associated microbiota for secondary metabolite biosynthesis.
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spelling pubmed-33974332012-07-20 Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges Pimentel-Elardo, Sheila Marie Grozdanov, Lubomir Proksch, Sebastian Hentschel, Ute Mar Drugs Article Genomic mining revealed one major nonribosomal peptide synthetase (NRPS) phylogenetic cluster in 12 marine sponge species, one ascidian, an actinobacterial isolate and seawater. Phylogenetic analysis predicts its taxonomic affiliation to the actinomycetes and hydroxy-phenyl-glycine as a likely substrate. Additionally, a phylogenetically distinct NRPS gene cluster was discovered in the microbial metagenome of the sponge Aplysina aerophoba, which shows highest similarities to NRPS genes that were previously assigned, by ways of single cell genomics, to a Chloroflexi sponge symbiont. Genomic mining studies such as the one presented here for NRPS genes, contribute to on-going efforts to characterize the genomic potential of sponge-associated microbiota for secondary metabolite biosynthesis. MDPI 2012-05-25 /pmc/articles/PMC3397433/ /pubmed/22822366 http://dx.doi.org/10.3390/md10061192 Text en © 2012 by the authors; licensee MDPI, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0/ This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/).
spellingShingle Article
Pimentel-Elardo, Sheila Marie
Grozdanov, Lubomir
Proksch, Sebastian
Hentschel, Ute
Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges
title Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges
title_full Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges
title_fullStr Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges
title_full_unstemmed Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges
title_short Diversity of Nonribosomal Peptide Synthetase Genes in the Microbial Metagenomes of Marine Sponges
title_sort diversity of nonribosomal peptide synthetase genes in the microbial metagenomes of marine sponges
topic Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397433/
https://www.ncbi.nlm.nih.gov/pubmed/22822366
http://dx.doi.org/10.3390/md10061192
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