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Reference Gene Selection in the Desert Plant Eremosparton songoricum
Eremosparton songoricum (Litv.) Vass. (E. songoricum) is a rare and extremely drought-tolerant desert plant that holds promise as a model organism for the identification of genes associated with water deficit stress. Here, we cloned and evaluated the expression of eight candidate reference genes usi...
Autores principales: | , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Molecular Diversity Preservation International (MDPI)
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397505/ https://www.ncbi.nlm.nih.gov/pubmed/22837673 http://dx.doi.org/10.3390/ijms13066944 |
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author | Li, Xiao-Shuang Yang, Hong-Lan Zhang, Dao-Yuan Zhang, Yuan-Ming Wood, Andrew J. |
author_facet | Li, Xiao-Shuang Yang, Hong-Lan Zhang, Dao-Yuan Zhang, Yuan-Ming Wood, Andrew J. |
author_sort | Li, Xiao-Shuang |
collection | PubMed |
description | Eremosparton songoricum (Litv.) Vass. (E. songoricum) is a rare and extremely drought-tolerant desert plant that holds promise as a model organism for the identification of genes associated with water deficit stress. Here, we cloned and evaluated the expression of eight candidate reference genes using quantitative real-time reverse transcriptase polymerase chain reactions. The expression of these candidate reference genes was analyzed in a diverse set of 20 samples including various E. songoricum plant tissues exposed to multiple environmental stresses. GeNorm analysis indicated that expression stability varied between the reference genes in the different experimental conditions, but the two most stable reference genes were sufficient for normalization in most conditions. EsEF and Esα-TUB were sufficient for various stress conditions, EsEF and EsACT were suitable for samples of differing germination stages, and EsGAPDHand EsUBQ were most stable across multiple adult tissue samples. The Es18S gene was unsuitable as a reference gene in our analysis. In addition, the expression level of the drought-stress related transcription factor EsDREB2 verified the utility of E. songoricum reference genes and indicated that no single gene was adequate for normalization on its own. This is the first systematic report on the selection of reference genes in E. songoricum, and these data will facilitate future work on gene expression in this species. |
format | Online Article Text |
id | pubmed-3397505 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Molecular Diversity Preservation International (MDPI) |
record_format | MEDLINE/PubMed |
spelling | pubmed-33975052012-07-26 Reference Gene Selection in the Desert Plant Eremosparton songoricum Li, Xiao-Shuang Yang, Hong-Lan Zhang, Dao-Yuan Zhang, Yuan-Ming Wood, Andrew J. Int J Mol Sci Article Eremosparton songoricum (Litv.) Vass. (E. songoricum) is a rare and extremely drought-tolerant desert plant that holds promise as a model organism for the identification of genes associated with water deficit stress. Here, we cloned and evaluated the expression of eight candidate reference genes using quantitative real-time reverse transcriptase polymerase chain reactions. The expression of these candidate reference genes was analyzed in a diverse set of 20 samples including various E. songoricum plant tissues exposed to multiple environmental stresses. GeNorm analysis indicated that expression stability varied between the reference genes in the different experimental conditions, but the two most stable reference genes were sufficient for normalization in most conditions. EsEF and Esα-TUB were sufficient for various stress conditions, EsEF and EsACT were suitable for samples of differing germination stages, and EsGAPDHand EsUBQ were most stable across multiple adult tissue samples. The Es18S gene was unsuitable as a reference gene in our analysis. In addition, the expression level of the drought-stress related transcription factor EsDREB2 verified the utility of E. songoricum reference genes and indicated that no single gene was adequate for normalization on its own. This is the first systematic report on the selection of reference genes in E. songoricum, and these data will facilitate future work on gene expression in this species. Molecular Diversity Preservation International (MDPI) 2012-06-07 /pmc/articles/PMC3397505/ /pubmed/22837673 http://dx.doi.org/10.3390/ijms13066944 Text en © 2012 by the authors; licensee Molecular Diversity Preservation International, Basel, Switzerland. http://creativecommons.org/licenses/by/3.0 This article is an open-access article distributed under the terms and conditions of the Creative Commons Attribution license (http://creativecommons.org/licenses/by/3.0/). |
spellingShingle | Article Li, Xiao-Shuang Yang, Hong-Lan Zhang, Dao-Yuan Zhang, Yuan-Ming Wood, Andrew J. Reference Gene Selection in the Desert Plant Eremosparton songoricum |
title | Reference Gene Selection in the Desert Plant Eremosparton songoricum |
title_full | Reference Gene Selection in the Desert Plant Eremosparton songoricum |
title_fullStr | Reference Gene Selection in the Desert Plant Eremosparton songoricum |
title_full_unstemmed | Reference Gene Selection in the Desert Plant Eremosparton songoricum |
title_short | Reference Gene Selection in the Desert Plant Eremosparton songoricum |
title_sort | reference gene selection in the desert plant eremosparton songoricum |
topic | Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397505/ https://www.ncbi.nlm.nih.gov/pubmed/22837673 http://dx.doi.org/10.3390/ijms13066944 |
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