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Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States
Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at stationarity the system minimizes a global function of the reaction fl...
Autores principales: | , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Public Library of Science
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397975/ https://www.ncbi.nlm.nih.gov/pubmed/22815715 http://dx.doi.org/10.1371/journal.pone.0039849 |
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author | De Martino, Andrea De Martino, Daniele Mulet, Roberto Uguzzoni, Guido |
author_facet | De Martino, Andrea De Martino, Daniele Mulet, Roberto Uguzzoni, Guido |
author_sort | De Martino, Andrea |
collection | PubMed |
description | Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at stationarity the system minimizes a global function of the reaction fluxes with the form of a Hopfield Hamiltonian with Hebbian couplings, that is explicitly seen to correspond to the rate of decay of entropy production over time. Guided by this analogy, we show that reaction networks can be formally re-cast as systems of interacting reactions that optimize the use of the available compounds by competing for substrates, akin to agents competing for a limited resource in an optimal allocation problem. As an illustration, we analyze the scenario that emerges in two simple cases: that of toy (random) reaction networks and that of a metabolic network model of the human red blood cell. |
format | Online Article Text |
id | pubmed-3397975 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Public Library of Science |
record_format | MEDLINE/PubMed |
spelling | pubmed-33979752012-07-19 Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States De Martino, Andrea De Martino, Daniele Mulet, Roberto Uguzzoni, Guido PLoS One Research Article Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at stationarity the system minimizes a global function of the reaction fluxes with the form of a Hopfield Hamiltonian with Hebbian couplings, that is explicitly seen to correspond to the rate of decay of entropy production over time. Guided by this analogy, we show that reaction networks can be formally re-cast as systems of interacting reactions that optimize the use of the available compounds by competing for substrates, akin to agents competing for a limited resource in an optimal allocation problem. As an illustration, we analyze the scenario that emerges in two simple cases: that of toy (random) reaction networks and that of a metabolic network model of the human red blood cell. Public Library of Science 2012-07-16 /pmc/articles/PMC3397975/ /pubmed/22815715 http://dx.doi.org/10.1371/journal.pone.0039849 Text en De Martino et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited. |
spellingShingle | Research Article De Martino, Andrea De Martino, Daniele Mulet, Roberto Uguzzoni, Guido Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States |
title | Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States |
title_full | Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States |
title_fullStr | Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States |
title_full_unstemmed | Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States |
title_short | Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States |
title_sort | reaction networks as systems for resource allocation: a variational principle for their non-equilibrium steady states |
topic | Research Article |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397975/ https://www.ncbi.nlm.nih.gov/pubmed/22815715 http://dx.doi.org/10.1371/journal.pone.0039849 |
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