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Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States

Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at stationarity the system minimizes a global function of the reaction fl...

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Detalles Bibliográficos
Autores principales: De Martino, Andrea, De Martino, Daniele, Mulet, Roberto, Uguzzoni, Guido
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Public Library of Science 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397975/
https://www.ncbi.nlm.nih.gov/pubmed/22815715
http://dx.doi.org/10.1371/journal.pone.0039849
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author De Martino, Andrea
De Martino, Daniele
Mulet, Roberto
Uguzzoni, Guido
author_facet De Martino, Andrea
De Martino, Daniele
Mulet, Roberto
Uguzzoni, Guido
author_sort De Martino, Andrea
collection PubMed
description Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at stationarity the system minimizes a global function of the reaction fluxes with the form of a Hopfield Hamiltonian with Hebbian couplings, that is explicitly seen to correspond to the rate of decay of entropy production over time. Guided by this analogy, we show that reaction networks can be formally re-cast as systems of interacting reactions that optimize the use of the available compounds by competing for substrates, akin to agents competing for a limited resource in an optimal allocation problem. As an illustration, we analyze the scenario that emerges in two simple cases: that of toy (random) reaction networks and that of a metabolic network model of the human red blood cell.
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spelling pubmed-33979752012-07-19 Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States De Martino, Andrea De Martino, Daniele Mulet, Roberto Uguzzoni, Guido PLoS One Research Article Within a fully microscopic setting, we derive a variational principle for the non-equilibrium steady states of chemical reaction networks, valid for time-scales over which chemical potentials can be taken to be slowly varying: at stationarity the system minimizes a global function of the reaction fluxes with the form of a Hopfield Hamiltonian with Hebbian couplings, that is explicitly seen to correspond to the rate of decay of entropy production over time. Guided by this analogy, we show that reaction networks can be formally re-cast as systems of interacting reactions that optimize the use of the available compounds by competing for substrates, akin to agents competing for a limited resource in an optimal allocation problem. As an illustration, we analyze the scenario that emerges in two simple cases: that of toy (random) reaction networks and that of a metabolic network model of the human red blood cell. Public Library of Science 2012-07-16 /pmc/articles/PMC3397975/ /pubmed/22815715 http://dx.doi.org/10.1371/journal.pone.0039849 Text en De Martino et al. http://creativecommons.org/licenses/by/4.0/ This is an open-access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are properly credited.
spellingShingle Research Article
De Martino, Andrea
De Martino, Daniele
Mulet, Roberto
Uguzzoni, Guido
Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States
title Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States
title_full Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States
title_fullStr Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States
title_full_unstemmed Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States
title_short Reaction Networks as Systems for Resource Allocation: A Variational Principle for Their Non-Equilibrium Steady States
title_sort reaction networks as systems for resource allocation: a variational principle for their non-equilibrium steady states
topic Research Article
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3397975/
https://www.ncbi.nlm.nih.gov/pubmed/22815715
http://dx.doi.org/10.1371/journal.pone.0039849
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