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FunSys: Software for functional analysis of prokaryotic transcriptome and proteome
The vast amount of data produced by next-generation sequencing (NGS) has necessitated the development of computational tools to assist in understanding the myriad functions performed by the biological macromolecules involved in heredity. In this work, we developed the FunSys programme, a stand-alone...
| Autores principales: | , , , , , , , , , , , , |
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| Formato: | Online Artículo Texto |
| Lenguaje: | English |
| Publicado: |
Biomedical Informatics
2012
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| Materias: | |
| Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398771/ https://www.ncbi.nlm.nih.gov/pubmed/22829724 http://dx.doi.org/10.6026/97320630008529 |
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| author | de Sá, Pablo Pinto, Anne Ramos, Rommel Thiago Jucá Coimbra, Nilson Baraúna, Rafael Dall'Agnol, Hivana Carneiro, Adriana Ranieri, Alex Valadares, Agenor Azevedo, Vasco Schneider, Maria Paula Barh, Debmalya Silva, Artur |
| author_facet | de Sá, Pablo Pinto, Anne Ramos, Rommel Thiago Jucá Coimbra, Nilson Baraúna, Rafael Dall'Agnol, Hivana Carneiro, Adriana Ranieri, Alex Valadares, Agenor Azevedo, Vasco Schneider, Maria Paula Barh, Debmalya Silva, Artur |
| author_sort | de Sá, Pablo |
| collection | PubMed |
| description | The vast amount of data produced by next-generation sequencing (NGS) has necessitated the development of computational tools to assist in understanding the myriad functions performed by the biological macromolecules involved in heredity. In this work, we developed the FunSys programme, a stand-alone tool with an user friendly interface that enables us to evaluate and correlate differential expression patterns from RNA sequencing and proteomics datasets. The FunSys generates charts and reports based on the results of the analysis of differential expression to aid the interpretation of the results. AVAILABILITY: FunSys and a test dataset are freely available at https://sourceforge.net/projects/funsysufpa/. It requires Sun jdk 6 or higher and MySQL server 5.1 or higher. |
| format | Online Article Text |
| id | pubmed-3398771 |
| institution | National Center for Biotechnology Information |
| language | English |
| publishDate | 2012 |
| publisher | Biomedical Informatics |
| record_format | MEDLINE/PubMed |
| spelling | pubmed-33987712012-07-24 FunSys: Software for functional analysis of prokaryotic transcriptome and proteome de Sá, Pablo Pinto, Anne Ramos, Rommel Thiago Jucá Coimbra, Nilson Baraúna, Rafael Dall'Agnol, Hivana Carneiro, Adriana Ranieri, Alex Valadares, Agenor Azevedo, Vasco Schneider, Maria Paula Barh, Debmalya Silva, Artur Bioinformation Software The vast amount of data produced by next-generation sequencing (NGS) has necessitated the development of computational tools to assist in understanding the myriad functions performed by the biological macromolecules involved in heredity. In this work, we developed the FunSys programme, a stand-alone tool with an user friendly interface that enables us to evaluate and correlate differential expression patterns from RNA sequencing and proteomics datasets. The FunSys generates charts and reports based on the results of the analysis of differential expression to aid the interpretation of the results. AVAILABILITY: FunSys and a test dataset are freely available at https://sourceforge.net/projects/funsysufpa/. It requires Sun jdk 6 or higher and MySQL server 5.1 or higher. Biomedical Informatics 2012-06-16 /pmc/articles/PMC3398771/ /pubmed/22829724 http://dx.doi.org/10.6026/97320630008529 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
| spellingShingle | Software de Sá, Pablo Pinto, Anne Ramos, Rommel Thiago Jucá Coimbra, Nilson Baraúna, Rafael Dall'Agnol, Hivana Carneiro, Adriana Ranieri, Alex Valadares, Agenor Azevedo, Vasco Schneider, Maria Paula Barh, Debmalya Silva, Artur FunSys: Software for functional analysis of prokaryotic transcriptome and proteome |
| title | FunSys: Software for functional analysis of prokaryotic transcriptome and proteome |
| title_full | FunSys: Software for functional analysis of prokaryotic transcriptome and proteome |
| title_fullStr | FunSys: Software for functional analysis of prokaryotic transcriptome and proteome |
| title_full_unstemmed | FunSys: Software for functional analysis of prokaryotic transcriptome and proteome |
| title_short | FunSys: Software for functional analysis of prokaryotic transcriptome and proteome |
| title_sort | funsys: software for functional analysis of prokaryotic transcriptome and proteome |
| topic | Software |
| url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398771/ https://www.ncbi.nlm.nih.gov/pubmed/22829724 http://dx.doi.org/10.6026/97320630008529 |
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