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Bacterial genome mapper: A comparative bacterial genome mapping tool

Recently, next generation sequencing (NGS) technologies have led to a revolutionary increase in sequencing speed and costefficacy. Consequently, a vast number of contigs from many recently sequenced bacterial genomes remain to be accurately mapped and annotated, requiring the development of more con...

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Detalles Bibliográficos
Autores principales: Lee, Kang Seon, Kim, Ryong Nam, Yoon, Byoung Ha, Kim, Dae Soo, Choi, Sang Haeng, Kim, Dong Wook, Nam, Seong Hyeuk, Kim, Aeri, Kang, Aram, Park, Kun Hyang, Jung, Jae Eun, Chae, Sung Hwa, Park, Hong Seog
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Biomedical Informatics 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398773/
https://www.ncbi.nlm.nih.gov/pubmed/22829725
http://dx.doi.org/10.6026/97320630008532
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author Lee, Kang Seon
Kim, Ryong Nam
Yoon, Byoung Ha
Kim, Dae Soo
Choi, Sang Haeng
Kim, Dong Wook
Nam, Seong Hyeuk
Kim, Aeri
Kang, Aram
Park, Kun Hyang
Jung, Jae Eun
Chae, Sung Hwa
Park, Hong Seog
author_facet Lee, Kang Seon
Kim, Ryong Nam
Yoon, Byoung Ha
Kim, Dae Soo
Choi, Sang Haeng
Kim, Dong Wook
Nam, Seong Hyeuk
Kim, Aeri
Kang, Aram
Park, Kun Hyang
Jung, Jae Eun
Chae, Sung Hwa
Park, Hong Seog
author_sort Lee, Kang Seon
collection PubMed
description Recently, next generation sequencing (NGS) technologies have led to a revolutionary increase in sequencing speed and costefficacy. Consequently, a vast number of contigs from many recently sequenced bacterial genomes remain to be accurately mapped and annotated, requiring the development of more convenient bioinformatics programs. In this paper, we present a newly developed web-based bioinformatics program, Bacterial Genome Mapper, which is suitable for mapping and annotating contigs that have been assembled from bacterial genome sequence raw data. By constructing a multiple alignment map between target contig sequences and two reference bacterial genome sequences, this program also provides very useful comparative genomics analysis of draft bacterial genomes. AVAILABILITY: Bacterial Genome Mapper is freely accessible at http://mbgm.kribb.re.kr
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spelling pubmed-33987732012-07-24 Bacterial genome mapper: A comparative bacterial genome mapping tool Lee, Kang Seon Kim, Ryong Nam Yoon, Byoung Ha Kim, Dae Soo Choi, Sang Haeng Kim, Dong Wook Nam, Seong Hyeuk Kim, Aeri Kang, Aram Park, Kun Hyang Jung, Jae Eun Chae, Sung Hwa Park, Hong Seog Bioinformation Server Recently, next generation sequencing (NGS) technologies have led to a revolutionary increase in sequencing speed and costefficacy. Consequently, a vast number of contigs from many recently sequenced bacterial genomes remain to be accurately mapped and annotated, requiring the development of more convenient bioinformatics programs. In this paper, we present a newly developed web-based bioinformatics program, Bacterial Genome Mapper, which is suitable for mapping and annotating contigs that have been assembled from bacterial genome sequence raw data. By constructing a multiple alignment map between target contig sequences and two reference bacterial genome sequences, this program also provides very useful comparative genomics analysis of draft bacterial genomes. AVAILABILITY: Bacterial Genome Mapper is freely accessible at http://mbgm.kribb.re.kr Biomedical Informatics 2012-06-16 /pmc/articles/PMC3398773/ /pubmed/22829725 http://dx.doi.org/10.6026/97320630008532 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited.
spellingShingle Server
Lee, Kang Seon
Kim, Ryong Nam
Yoon, Byoung Ha
Kim, Dae Soo
Choi, Sang Haeng
Kim, Dong Wook
Nam, Seong Hyeuk
Kim, Aeri
Kang, Aram
Park, Kun Hyang
Jung, Jae Eun
Chae, Sung Hwa
Park, Hong Seog
Bacterial genome mapper: A comparative bacterial genome mapping tool
title Bacterial genome mapper: A comparative bacterial genome mapping tool
title_full Bacterial genome mapper: A comparative bacterial genome mapping tool
title_fullStr Bacterial genome mapper: A comparative bacterial genome mapping tool
title_full_unstemmed Bacterial genome mapper: A comparative bacterial genome mapping tool
title_short Bacterial genome mapper: A comparative bacterial genome mapping tool
title_sort bacterial genome mapper: a comparative bacterial genome mapping tool
topic Server
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398773/
https://www.ncbi.nlm.nih.gov/pubmed/22829725
http://dx.doi.org/10.6026/97320630008532
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