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Bacterial genome mapper: A comparative bacterial genome mapping tool
Recently, next generation sequencing (NGS) technologies have led to a revolutionary increase in sequencing speed and costefficacy. Consequently, a vast number of contigs from many recently sequenced bacterial genomes remain to be accurately mapped and annotated, requiring the development of more con...
Autores principales: | , , , , , , , , , , , , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Biomedical Informatics
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398773/ https://www.ncbi.nlm.nih.gov/pubmed/22829725 http://dx.doi.org/10.6026/97320630008532 |
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author | Lee, Kang Seon Kim, Ryong Nam Yoon, Byoung Ha Kim, Dae Soo Choi, Sang Haeng Kim, Dong Wook Nam, Seong Hyeuk Kim, Aeri Kang, Aram Park, Kun Hyang Jung, Jae Eun Chae, Sung Hwa Park, Hong Seog |
author_facet | Lee, Kang Seon Kim, Ryong Nam Yoon, Byoung Ha Kim, Dae Soo Choi, Sang Haeng Kim, Dong Wook Nam, Seong Hyeuk Kim, Aeri Kang, Aram Park, Kun Hyang Jung, Jae Eun Chae, Sung Hwa Park, Hong Seog |
author_sort | Lee, Kang Seon |
collection | PubMed |
description | Recently, next generation sequencing (NGS) technologies have led to a revolutionary increase in sequencing speed and costefficacy. Consequently, a vast number of contigs from many recently sequenced bacterial genomes remain to be accurately mapped and annotated, requiring the development of more convenient bioinformatics programs. In this paper, we present a newly developed web-based bioinformatics program, Bacterial Genome Mapper, which is suitable for mapping and annotating contigs that have been assembled from bacterial genome sequence raw data. By constructing a multiple alignment map between target contig sequences and two reference bacterial genome sequences, this program also provides very useful comparative genomics analysis of draft bacterial genomes. AVAILABILITY: Bacterial Genome Mapper is freely accessible at http://mbgm.kribb.re.kr |
format | Online Article Text |
id | pubmed-3398773 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Biomedical Informatics |
record_format | MEDLINE/PubMed |
spelling | pubmed-33987732012-07-24 Bacterial genome mapper: A comparative bacterial genome mapping tool Lee, Kang Seon Kim, Ryong Nam Yoon, Byoung Ha Kim, Dae Soo Choi, Sang Haeng Kim, Dong Wook Nam, Seong Hyeuk Kim, Aeri Kang, Aram Park, Kun Hyang Jung, Jae Eun Chae, Sung Hwa Park, Hong Seog Bioinformation Server Recently, next generation sequencing (NGS) technologies have led to a revolutionary increase in sequencing speed and costefficacy. Consequently, a vast number of contigs from many recently sequenced bacterial genomes remain to be accurately mapped and annotated, requiring the development of more convenient bioinformatics programs. In this paper, we present a newly developed web-based bioinformatics program, Bacterial Genome Mapper, which is suitable for mapping and annotating contigs that have been assembled from bacterial genome sequence raw data. By constructing a multiple alignment map between target contig sequences and two reference bacterial genome sequences, this program also provides very useful comparative genomics analysis of draft bacterial genomes. AVAILABILITY: Bacterial Genome Mapper is freely accessible at http://mbgm.kribb.re.kr Biomedical Informatics 2012-06-16 /pmc/articles/PMC3398773/ /pubmed/22829725 http://dx.doi.org/10.6026/97320630008532 Text en © 2012 Biomedical Informatics This is an open-access article, which permits unrestricted use, distribution, and reproduction in any medium, for non-commercial purposes, provided the original author and source are credited. |
spellingShingle | Server Lee, Kang Seon Kim, Ryong Nam Yoon, Byoung Ha Kim, Dae Soo Choi, Sang Haeng Kim, Dong Wook Nam, Seong Hyeuk Kim, Aeri Kang, Aram Park, Kun Hyang Jung, Jae Eun Chae, Sung Hwa Park, Hong Seog Bacterial genome mapper: A comparative bacterial genome mapping tool |
title | Bacterial genome mapper: A comparative bacterial genome mapping tool |
title_full | Bacterial genome mapper: A comparative bacterial genome mapping tool |
title_fullStr | Bacterial genome mapper: A comparative bacterial genome mapping tool |
title_full_unstemmed | Bacterial genome mapper: A comparative bacterial genome mapping tool |
title_short | Bacterial genome mapper: A comparative bacterial genome mapping tool |
title_sort | bacterial genome mapper: a comparative bacterial genome mapping tool |
topic | Server |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3398773/ https://www.ncbi.nlm.nih.gov/pubmed/22829725 http://dx.doi.org/10.6026/97320630008532 |
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