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Incorrect handling of calibration information in divergence time inference: an example from volcanic islands
Divergence time studies rely on calibration information from several sources. The age of volcanic islands is one of the standard references to obtain chronological data to estimate the absolute times of lineage diversifications. This strategy assumes that cladogenesis is necessarily associated with...
Autores principales: | , |
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Formato: | Online Artículo Texto |
Lenguaje: | English |
Publicado: |
Blackwell Publishing Ltd
2012
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Materias: | |
Acceso en línea: | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3399139/ https://www.ncbi.nlm.nih.gov/pubmed/22822429 http://dx.doi.org/10.1002/ece3.94 |
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author | Mello, Beatriz Schrago, Carlos G |
author_facet | Mello, Beatriz Schrago, Carlos G |
author_sort | Mello, Beatriz |
collection | PubMed |
description | Divergence time studies rely on calibration information from several sources. The age of volcanic islands is one of the standard references to obtain chronological data to estimate the absolute times of lineage diversifications. This strategy assumes that cladogenesis is necessarily associated with island formation, and punctual calibrations are commonly used to date the splits of endemic island species. Here, we re-examined three studies that inferred divergence times for different Hawaiian lineages assuming fixed calibration points. We show that, by permitting probabilistic calibrations, some divergences are estimated to be significantly younger or older than the age of the island formation, thus yielding distinct ecological scenarios for the speciation process. The results highlight the importance of using calibration information correctly, as well as the possibility of incorporating volcanic island studies into a formal, biogeographical hypothesis-testing framework. |
format | Online Article Text |
id | pubmed-3399139 |
institution | National Center for Biotechnology Information |
language | English |
publishDate | 2012 |
publisher | Blackwell Publishing Ltd |
record_format | MEDLINE/PubMed |
spelling | pubmed-33991392012-07-20 Incorrect handling of calibration information in divergence time inference: an example from volcanic islands Mello, Beatriz Schrago, Carlos G Ecol Evol Original Research Divergence time studies rely on calibration information from several sources. The age of volcanic islands is one of the standard references to obtain chronological data to estimate the absolute times of lineage diversifications. This strategy assumes that cladogenesis is necessarily associated with island formation, and punctual calibrations are commonly used to date the splits of endemic island species. Here, we re-examined three studies that inferred divergence times for different Hawaiian lineages assuming fixed calibration points. We show that, by permitting probabilistic calibrations, some divergences are estimated to be significantly younger or older than the age of the island formation, thus yielding distinct ecological scenarios for the speciation process. The results highlight the importance of using calibration information correctly, as well as the possibility of incorporating volcanic island studies into a formal, biogeographical hypothesis-testing framework. Blackwell Publishing Ltd 2012-03 /pmc/articles/PMC3399139/ /pubmed/22822429 http://dx.doi.org/10.1002/ece3.94 Text en © 2012 The Author. Published by Blackwell Publishing Ltd. http://creativecommons.org/licenses/by/2.5/ This is an open access article under the terms of the Creative Commons Attribution Non Commercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes. |
spellingShingle | Original Research Mello, Beatriz Schrago, Carlos G Incorrect handling of calibration information in divergence time inference: an example from volcanic islands |
title | Incorrect handling of calibration information in divergence time inference: an example from volcanic islands |
title_full | Incorrect handling of calibration information in divergence time inference: an example from volcanic islands |
title_fullStr | Incorrect handling of calibration information in divergence time inference: an example from volcanic islands |
title_full_unstemmed | Incorrect handling of calibration information in divergence time inference: an example from volcanic islands |
title_short | Incorrect handling of calibration information in divergence time inference: an example from volcanic islands |
title_sort | incorrect handling of calibration information in divergence time inference: an example from volcanic islands |
topic | Original Research |
url | https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3399139/ https://www.ncbi.nlm.nih.gov/pubmed/22822429 http://dx.doi.org/10.1002/ece3.94 |
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