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Incorrect handling of calibration information in divergence time inference: an example from volcanic islands

Divergence time studies rely on calibration information from several sources. The age of volcanic islands is one of the standard references to obtain chronological data to estimate the absolute times of lineage diversifications. This strategy assumes that cladogenesis is necessarily associated with...

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Autores principales: Mello, Beatriz, Schrago, Carlos G
Formato: Online Artículo Texto
Lenguaje:English
Publicado: Blackwell Publishing Ltd 2012
Materias:
Acceso en línea:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3399139/
https://www.ncbi.nlm.nih.gov/pubmed/22822429
http://dx.doi.org/10.1002/ece3.94
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author Mello, Beatriz
Schrago, Carlos G
author_facet Mello, Beatriz
Schrago, Carlos G
author_sort Mello, Beatriz
collection PubMed
description Divergence time studies rely on calibration information from several sources. The age of volcanic islands is one of the standard references to obtain chronological data to estimate the absolute times of lineage diversifications. This strategy assumes that cladogenesis is necessarily associated with island formation, and punctual calibrations are commonly used to date the splits of endemic island species. Here, we re-examined three studies that inferred divergence times for different Hawaiian lineages assuming fixed calibration points. We show that, by permitting probabilistic calibrations, some divergences are estimated to be significantly younger or older than the age of the island formation, thus yielding distinct ecological scenarios for the speciation process. The results highlight the importance of using calibration information correctly, as well as the possibility of incorporating volcanic island studies into a formal, biogeographical hypothesis-testing framework.
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spelling pubmed-33991392012-07-20 Incorrect handling of calibration information in divergence time inference: an example from volcanic islands Mello, Beatriz Schrago, Carlos G Ecol Evol Original Research Divergence time studies rely on calibration information from several sources. The age of volcanic islands is one of the standard references to obtain chronological data to estimate the absolute times of lineage diversifications. This strategy assumes that cladogenesis is necessarily associated with island formation, and punctual calibrations are commonly used to date the splits of endemic island species. Here, we re-examined three studies that inferred divergence times for different Hawaiian lineages assuming fixed calibration points. We show that, by permitting probabilistic calibrations, some divergences are estimated to be significantly younger or older than the age of the island formation, thus yielding distinct ecological scenarios for the speciation process. The results highlight the importance of using calibration information correctly, as well as the possibility of incorporating volcanic island studies into a formal, biogeographical hypothesis-testing framework. Blackwell Publishing Ltd 2012-03 /pmc/articles/PMC3399139/ /pubmed/22822429 http://dx.doi.org/10.1002/ece3.94 Text en © 2012 The Author. Published by Blackwell Publishing Ltd. http://creativecommons.org/licenses/by/2.5/ This is an open access article under the terms of the Creative Commons Attribution Non Commercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.
spellingShingle Original Research
Mello, Beatriz
Schrago, Carlos G
Incorrect handling of calibration information in divergence time inference: an example from volcanic islands
title Incorrect handling of calibration information in divergence time inference: an example from volcanic islands
title_full Incorrect handling of calibration information in divergence time inference: an example from volcanic islands
title_fullStr Incorrect handling of calibration information in divergence time inference: an example from volcanic islands
title_full_unstemmed Incorrect handling of calibration information in divergence time inference: an example from volcanic islands
title_short Incorrect handling of calibration information in divergence time inference: an example from volcanic islands
title_sort incorrect handling of calibration information in divergence time inference: an example from volcanic islands
topic Original Research
url https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3399139/
https://www.ncbi.nlm.nih.gov/pubmed/22822429
http://dx.doi.org/10.1002/ece3.94
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